Factsheet for Zm00001d045516_P006

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003830_P001
Zm00001d005351_P001
Zm00001d007842_P002
Zm00001d009837_P001
Zm00001d011571_P001
Zm00001d013559_P001
Zm00001d018742_P001
Zm00001d025333_P001
Zm00001d030350_P001
Zm00001d033404_P002
Zm00001d033859_P002
Zm00001d033861_P001
Zm00001d034212_P001
Zm00001d035266_P001
Zm00001d037596_P001
Zm00001d038994_P001
Zm00001d040789_P001
Zm00001d041791_P001
Zm00001d043902_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62090.1	Zm00001d009837_P001	AT2G47700.1	21798944
AT5G62090.1	Zm00001d037596_P001	AT2G47700.1	21798944
AT5G62090.1	Zm00001d040789_P001	AT2G47700.1	21798944
AT5G62090.1	Zm00001d003830_P001	AT3G44720.1	21798944
AT5G62090.1	Zm00001d005351_P001	AT3G44720.1	21798944
AT5G62090.1	Zm00001d025333_P001	AT3G44720.1	21798944
AT5G62090.1	Zm00001d011571_P001	AT3G58630.1	21798944
AT5G62090.1	Zm00001d030350_P001	AT3G58630.1	21798944
AT5G62090.1	Zm00001d038994_P001	AT3G58630.1	21798944
AT5G62090.1	Zm00001d043902_P001	AT3G58630.1	21798944
AT5G62090.1	Zm00001d007842_P002	AT4G08150.1	21798944
AT5G62090.1	Zm00001d013559_P001	AT4G08150.1	21798944
AT5G62090.1	Zm00001d018742_P001	AT4G08150.1	21798944
AT5G62090.1	Zm00001d033404_P002	AT4G08150.1	21798944
AT5G62090.1	Zm00001d033859_P002	AT4G08150.1	21798944
AT5G62090.1	Zm00001d033861_P001	AT4G08150.1	21798944
AT5G62090.1	Zm00001d034212_P001	AT4G08150.1	21798944
AT5G62090.1	Zm00001d035266_P001	AT5G53950.1	21798944
AT5G62090.1	Zm00001d041791_P001	AT5G53950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG19170	Sorghum	plastid	84.13	83.48
Zm00001d035990_P002	Maize	plastid	80.26	79.74
Os06t0126000-02	Rice	cytosol, nucleus	65.81	62.04
Zm00001d018890_P006	Maize	nucleus, plastid	57.16	58.83
TraesCS7A01G520700.1	Wheat	nucleus	59.87	57.5
TraesCS7B01G437100.1	Wheat	plastid	59.48	57.13
HORVU7Hr1G115870.4	Barley	plastid	57.81	55.65
TraesCS7D01G146100.2	Wheat	nucleus, plastid	59.35	54.63
TraesCS7A01G144600.3	Wheat	nucleus, plastid	59.23	53.68
TraesCS7D01G510400.2	Wheat	nucleus	60.13	53.62
TraesCS7B01G047100.4	Wheat	plastid	58.32	53.11
TraesCS7D01G050000.5	Wheat	nucleus, plastid	58.71	53.09
TraesCS4A01G441500.1	Wheat	nucleus, plastid	58.97	52.95
TraesCS7A01G054900.2	Wheat	nucleus, plastid	59.1	52.22
HORVU7Hr1G029650.10	Barley	plastid	58.45	51.83
HORVU7Hr1G010050.2	Barley	nucleus, plastid	58.45	51.77
KRG88471	Soybean	nucleus, plastid	25.03	45.33
GSMUA_Achr7P05870_001	Banana	nucleus	15.87	43.01
Solyc03g026190.2.1	Tomato	plastid	30.84	42.38
GSMUA_Achr1P16220_001	Banana	nucleus	37.55	41.63
KRH38603	Soybean	plastid	28.52	41.62
GSMUA_Achr1P07930_001	Banana	nucleus	40.0	39.04
KRH38604	Soybean	nucleus	39.35	37.75
CDY57709	Canola	nucleus, plastid	23.74	37.4
KRH09131	Soybean	nucleus, plastid	40.77	36.36
GSMUA_Achr10P...	Banana	nucleus	36.26	36.26
CDX89417	Canola	nucleus	17.94	36.1
CDY52362	Canola	nucleus	32.0	36.05
CDY54085	Canola	nucleus, plastid	32.77	36.03
CDY30691	Canola	nucleus	35.23	36.02
AT4G25515.1	Thale cress	nucleus, plastid	31.74	35.91
CDX92713	Canola	nucleus, plastid	31.61	35.66
CDY50201	Canola	nucleus, plastid	31.23	35.48
Bra019159.1-P	Field mustard	nucleus, plastid	31.23	35.48
VIT_16s0100g00500.t01	Wine grape	plastid	39.48	35.42
KRH09132	Soybean	plastid	38.58	34.02
Bra010458.1-P	Field mustard	nucleus, plastid	26.32	33.83
AT5G62090.1	Thale cress	nucleus	35.61	33.82
Bra029289.1-P	Field mustard	nucleus	28.77	33.74
AT4G25520.1	Thale cress	plastid	32.13	33.29
VIT_02s0025g04390.t01	Wine grape	vacuole	29.42	33.19
Bra013897.1-P	Field mustard	nucleus	16.9	32.83
CDX92714	Canola	cytosol	22.45	32.71
GSMUA_Achr2P03310_001	Banana	nucleus	33.55	32.22
PGSC0003DMT400037024	Potato	plastid	37.94	32.1
Zm00001d023706_P002	Maize	nucleus	25.68	21.94
Zm00001d007295_P003	Maize	nucleus, plastid	25.55	21.64
Zm00001d049125_P002	Maize	nucleus, plastid	25.94	21.61
Zm00001d041803_P001	Maize	nucleus	25.42	21.51

Protein Annotations

EMBL:BT055811	EnsemblPlants:Zm00001d045516_P006	EnsemblPlants:Zm00001d045516_T006	EnsemblPlantsGene:Zm00001d045516	EntrezGene:100280226	InterPro:LIM-bd/SEUSS
PANTHER:PTHR10378	PANTHER:PTHR10378:SF12	PFAM:PF01803	ProteinID:AQL02450.1	ProteinID:AQL02452.1	ProteinID:AQL02455.1
ProteinID:AQL02457.1	ProteinID:AQL02459.1	ProteinID:AQL02460.1	ProteinID:AQL02461.1	ProteinID:AQL02465.1	SEG:seg
UniParc:UPI0001917767	UniProt:B8A2L9	MapMan:35.1	:	:	:

Description

Probable transcriptional regulator SLK2

Coordinates

chr9:+:25240802..25249828

Molecular Weight (calculated)

84474.1 Da

IEP (calculated)

8.813

GRAVY (calculated)

-0.591

Length

775 amino acids

Sequence
(BLAST)

001: MNGTHPWASM SGGPCSNLGY ARDMNGNVPI STTNSSGPSI GVSSLVTDAN SSLSGGAQLQ PSTSMNGDSL MRVPASPISF SSNNISGSSV IDGCIMQQSP
101: PQEQVQKQRS SSVTSQPVID AGGALHAQKK SRIDVCQGGI TEQQLIQQLL HGQNSLHYQG QQNPQLQALM QHHKLAQLQQ RQQQHPFSQM QQPQVGIPRQ
201: PQLRPPLAQT GMQLGGPVRS PIESGICSRR ILQYLYHKRH RPENNPITYW RKLVEEYFAP RARERWCVSS YENRGNSSAA APQKALDTWR CGICNTHGGK
301: GYEVTYEVLP RLCQIRFDHG VIDEYLYFDS PNEFRLPNGQ MVLEHAKVVQ KSVYEHLHVI HEGHLRIIFT PELKIMSWEF CSRRHEEYTT RKTIAPQVNN
401: LLQVAQKFQA VVSESGSAGI SNNDAQTICN MFVNASRQLA KNLEHHTLNE HGLSKRYVRC LQISEVVNHM KDLIEFSHKS KLGPKESLNS YSKTTAKFEN
501: MHDSRQAMAA ANLANNQSNT KLMGVKQETS TSANNQTPGA GAIGNNNLPI AAPLNTYQNM LRSSGASTIS LQQEASSVFK GPTAMHNGMQ LEAARSFLGP
601: NQVQFQHHPP SSSFQQQQQN SFHGFGVNPQ YQQHVLNQLL QEVKNSNNRS KAQQPPLDAP PPNASGGGLA PGVATPNVIA ATGEQGQHVN NSSSNHNGTV
701: KGAAGTGPSN VINNSTASMA SARNSSFKSV SSSPAAAGNA VSSKVDDSFH QLEDLDDMIA NELVESGLFG AGHGW

Best Arabidopsis Sequence Match ( AT4G25515.1 )
(BLAST)

001: MQRSSGINNL HIPTSPMSFS SNGINLPGSM VLDGSPSMQH LPQQQQRQLL EQQAGQGSVP MRENSYSHVD KKLRLEVKQE DLLQQQILQQ LIQRQDPTGR
101: NPQMQALLQQ QRVRQHQQML QSMSPSQRLQ LQKQQQLRQQ LQQQGTQQIS PNVRPYEVGV CARKLMMYLY HLQQRPAENC ITYWRKFVAE YFSPRAKQRL
201: CLSQYESVGH HALGMFPQAA PDMWQCDLCG TKSGKGFEAT FDVLARLIEI KFASGIIDEL LYLDHPRENR FPNGLMMLEY RKAVQETVHE QFRVVREGHL
301: RIIFSPDLKI LSWEFCARRH EELLLRRLIA PQVNQLLQVA QKCQSTISES GSQGVSQQDI QSNSNMVLGA GRQLAKFMEL QSLNDLGYPK RYIRTLQISE
401: VVKSMKDLMN FTGEHKVGPL EGLKQLLEQT ATVKLQRQKM QEMEQFGNSG AMSGPAQAQM TLSSGTMSGS TANNNSNNHH QIVGRGAMNG SPQATAALTN
501: YQSMLIRQNA MNNQNSNTGN QEGFSSQNPT LNSNQSPSSS SQQRENLATS GFPSSPQMQQ QQHILNGTPN MLPQNHPHQL QSPHSHGNTQ EQQMLHQLLQ
601: EMTENGASVE QQQAFPGQSG SNNNTERNTT ASTSNISGGG RVPSRINSFK ASSNNNLPFS EDISVTDHDF SEDGFFNNSD IYGGL

Arabidopsis Description

SLK3Probable transcriptional regulator SLK3 [Source:UniProtKB/Swiss-Prot;Acc:F4JT98]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.