Factsheet for Zm00001d003830_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003830_P001
Zm00001d004553_P001
Zm00001d005351_P001
Zm00001d018501_P001
Zm00001d024940_P001
Zm00001d025333_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G44720.1	Zm00001d003830_P001	AT3G44720.1	21798944
AT3G44720.1	Zm00001d005351_P001	AT3G44720.1	21798944
AT3G44720.1	Zm00001d025333_P001	AT3G44720.1	21798944
AT3G44720.1	Zm00001d018501_P001	AT3G54826.1	21798944
AT3G44720.1	Zm00001d004553_P001	AT5G65683.1	21798944
AT3G44720.1	Zm00001d024940_P001	AT5G65683.1	21798944
AT5G22630.1	Zm00001d003830_P001	AT3G44720.1	21798944
AT5G22630.1	Zm00001d005351_P001	AT3G44720.1	21798944
AT5G22630.1	Zm00001d025333_P001	AT3G44720.1	21798944
AT5G22630.1	Zm00001d003830_P001	AT5G22630.1	21798944
AT5G22630.1	Zm00001d005351_P001	AT5G22630.1	21798944
AT5G22630.1	Zm00001d025333_P001	AT5G22630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025333_P001	Maize	plastid	92.72	94.27
EES10725	Sorghum	plastid	94.6	93.29
TraesCS2D01G290000.1	Wheat	plastid	88.03	90.58
TraesCS2B01G308500.1	Wheat	plastid	87.79	90.34
TraesCS2A01G292000.1	Wheat	plastid	87.56	90.1
Os04t0406600-01	Rice	plastid	89.91	87.84
HORVU2Hr1G072210.1	Barley	cytosol, mitochondrion, plastid	70.66	85.03
TraesCS2B01G308400.1	Wheat	plastid	79.81	81.15
TraesCS2D01G289900.2	Wheat	plastid	78.87	80.77
VIT_06s0061g01300.t01	Wine grape	mitochondrion, plastid	72.54	75.18
Zm00001d005351_P001	Maize	plastid	73.47	74.17
HORVU2Hr1G072180.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	79.58	73.7
TraesCS2A01G291900.1	Wheat	plastid	78.87	72.26
KRH26581	Soybean	plastid	72.07	72.24
CDY06307	Canola	cytosol	66.67	72.08
KRH22725	Soybean	plastid	71.6	71.93
Bra031620.1-P	Field mustard	cytosol	66.2	71.57
AT1G08250.1	Thale cress	plastid	69.25	71.43
PGSC0003DMT400018339	Potato	plastid	72.54	71.36
Solyc06g074530.1.1	Tomato	plastid	72.07	70.9
CDY30526	Canola	plastid	69.25	70.57
Solyc11g066890.1.1	Tomato	plastid	70.66	70.49
PGSC0003DMT400068261	Potato	plastid	71.6	70.44
Bra034372.1-P	Field mustard	plastid	69.01	70.33
CDX77139	Canola	plastid	69.72	69.72
GSMUA_Achr10P...	Banana	plastid	33.8	69.23
AT2G27820.1	Thale cress	plastid	68.54	68.87
KRH25168	Soybean	plastid	69.01	68.69
KRH30513	Soybean	plastid	68.78	68.46
CDY22691	Canola	cytosol	66.9	68.18
AT3G44720.1	Thale cress	plastid	66.43	66.75
AT5G22630.1	Thale cress	plastid	65.49	65.65
CDY72678	Canola	plastid	64.55	65.63
CDY09152	Canola	plastid	65.26	65.41
CDX92343	Canola	plastid	65.02	65.18
Bra031619.1-P	Field mustard	plastid	64.08	65.16
Bra019468.1-P	Field mustard	plastid	58.92	65.03
CDY26946	Canola	plastid	64.79	64.94
CDY59281	Canola	plastid	64.79	64.94
CDY22692	Canola	plastid	63.62	64.68
Bra020203.1-P	Field mustard	plastid	65.26	64.35
Bra002423.1-P	Field mustard	plastid	65.26	64.35
CDY30932	Canola	plastid	58.22	64.25
CDX77841	Canola	plastid	57.28	63.05
Zm00001d047755_P006	Maize	plastid	46.48	50.51
Zm00001d021611_P001	Maize	cytosol	32.63	46.03
Zm00001d028712_P007	Maize	plastid	45.07	44.86
Zm00001d048561_P001	Maize	plastid	36.38	39.95

Protein Annotations

KEGG:00400+4.2.1.51	EntrezGene:100193934	Gene3D:3.30.70.260	Gene3D:3.40.190.10	MapMan:4.1.5.2.4	InterPro:ACT_dom
UniProt:B4FSJ7	EMBL:BT040085	GO:GO:0003674	GO:GO:0003824	GO:GO:0004664	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652
GO:GO:0009058	GO:GO:0009073	GO:GO:0009094	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570
GO:GO:0009987	GO:GO:0016829	GO:GO:0047769	InterPro:IPR001086	InterPro:IPR002912	ProteinID:ONM17797.1
PFAM:PF00800	ScanProsite:PS00857	ScanProsite:PS00858	PFscan:PS51171	PFscan:PS51671	PANTHER:PTHR21022
PANTHER:PTHR21022:SF13	InterPro:Preph_deHydtase	InterPro:Preph_deHydtase_CS	SUPFAM:SSF53850	SUPFAM:SSF55021	UniParc:UPI00017B75EC
EnsemblPlantsGene:Zm00001d003830	EnsemblPlants:Zm00001d003830_P001	EnsemblPlants:Zm00001d003830_T001	SEG:seg	:	:

Description

arogenate dehydratase6Arogenate dehydratase/prephenate dehydratase 6 chloroplastic

Coordinates

chr2:-:61203599..61204879

Molecular Weight (calculated)

45389.2 Da

IEP (calculated)

7.019

GRAVY (calculated)

-0.011

Length

426 amino acids

Sequence
(BLAST)

001: MAAAGITRAP IGQNPRLACY APGRGGGVVR CSLQGAVVGG RAEWQSSCAV LSSKVAALGT HSVNGHVAPA PAPAPTQNGA VLDLVPVSSS INGAITKNLP
101: QPLRIADLSP APMHGSQLRV AYQGVPGAYS EKAAGKAYPG CDAIPCDQFE VAFQAVELWI ADRAVLPVEN SLGGSIHRNY DLLLRHRLHI VGEVQLPVHH
201: CLLALPGVRK ECLTRVMSHP QALAQCEHTL TAMGLNVVRE AFDDTAGAAE YVAANGLRDT AAIASSRAAE LYGMEVLADG IQDDSGNVTR FVMLAREPVV
301: PRTDRPFKTS IVFAHDREGT SVLFKVLSAF AFRDISLTKI ESRPHRHRPI RLVDDANVGT AKHFEYMFYV DFQASLAEPR AQNALAEVQE YTSFLRVLGS
401: YPMDMTPMTA GSSSTVVSSS DDPSSS

Best Arabidopsis Sequence Match ( AT1G08250.1 )
(BLAST)

001: MKALSSSSPI LGASQPATAT ALIARSGRSE WQSSCAILTS KVISQEESES LPVPPVSGGV DHLNGHNSAA ARVPGMNLVP IEKSDSNPLV PQHRHNPLKP
101: LSMTDLSPAP MHGSNLRVAY QGVPGAYSEA AAGKAYPNCQ AIPCDQFEVA FQAVELWIAD RAVLPVENSL GGSIHRNYDL LLRHRLHIVG EVQLPVHHCL
201: LALPGVRKEF LTRVISHPQG LAQCEHTLTK LGLNVAREAV DDTAGAAEFI ASNNLRDTAA IASARAAEIY GLEILEDGIQ DDVSNVTRFV MLAREPIIPR
301: TDRPFKTSIV FAHEKGTSVL FKVLSAFAFR DISLTKIESR PNHNRPIRVV DDANVGTAKH FEYMFYVDFE ASMAEARAQN ALAEVQEFTS FLRVLGSYPM
401: DMTPWSPTSS TSS

Arabidopsis Description

ADT6Arogenate dehydratase [Source:UniProtKB/TrEMBL;Acc:A0A178W954]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.