Factsheet for Os04t0406600-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0819700-01
Os04t0101800-01
Os04t0406600-01
Os09t0565700-01
Os09t0566050-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G44720.1	Os04t0406600-01	AT3G44720.1	21798944
AT3G44720.1	Os09t0565700-01	AT3G44720.1	21798944
AT3G44720.1	Os09t0566050-00	AT3G44720.1	21798944
AT3G44720.1	Os02t0819700-01	AT3G54826.1	21798944
AT3G44720.1	Os04t0101800-01	AT5G65683.1	21798944
AT5G22630.1	Os04t0406600-01	AT3G44720.1	21798944
AT5G22630.1	Os09t0565700-01	AT3G44720.1	21798944
AT5G22630.1	Os09t0566050-00	AT3G44720.1	21798944
AT5G22630.1	Os04t0406600-01	AT5G22630.1	21798944
AT5G22630.1	Os09t0565700-01	AT5G22630.1	21798944
AT5G22630.1	Os09t0566050-00	AT5G22630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003830_P001	Maize	plastid	87.84	89.91
TraesCS2D01G290000.1	Wheat	plastid	85.32	89.86
Zm00001d025333_P001	Maize	plastid	86.24	89.74
TraesCS2B01G308500.1	Wheat	plastid	85.09	89.61
TraesCS2A01G292000.1	Wheat	plastid	84.86	89.37
EES10725	Sorghum	plastid	87.61	88.43
HORVU2Hr1G072210.1	Barley	cytosol, mitochondrion, plastid	69.27	85.31
TraesCS2B01G308400.1	Wheat	plastid	78.44	81.62
TraesCS2D01G289900.2	Wheat	plastid	77.52	81.25
Os09t0565700-01	Rice	plastid	70.87	77.06
Os09t0566050-00	Rice	plastid	71.33	76.41
VIT_06s0061g01300.t01	Wine grape	mitochondrion, plastid	71.1	75.43
HORVU2Hr1G072180.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	77.75	73.7
TraesCS2A01G291900.1	Wheat	plastid	77.52	72.69
KRH26581	Soybean	plastid	70.41	72.24
KRH22725	Soybean	plastid	69.72	71.7
CDY06307	Canola	cytosol	64.68	71.57
PGSC0003DMT400018339	Potato	plastid	70.87	71.36
CDY30526	Canola	plastid	68.35	71.29
AT1G08250.1	Thale cress	plastid	67.43	71.19
Solyc06g074530.1.1	Tomato	plastid	70.64	71.13
Bra034372.1-P	Field mustard	plastid	67.89	70.81
Bra031620.1-P	Field mustard	cytosol	63.99	70.81
AT2G27820.1	Thale cress	plastid	68.81	70.75
Solyc11g066890.1.1	Tomato	plastid	69.27	70.73
PGSC0003DMT400068261	Potato	plastid	69.95	70.44
GSMUA_Achr10P...	Banana	plastid	33.26	69.71
CDX77139	Canola	plastid	67.89	69.48
KRH25168	Soybean	plastid	66.97	68.22
KRH30513	Soybean	plastid	66.97	68.22
CDY22691	Canola	cytosol	64.91	67.7
AT3G44720.1	Thale cress	plastid	65.37	67.22
AT5G22630.1	Thale cress	plastid	64.45	66.12
CDY72678	Canola	plastid	63.53	66.11
CDX92343	Canola	plastid	64.22	65.88
CDY09152	Canola	plastid	63.99	65.65
Bra031619.1-P	Field mustard	plastid	63.07	65.63
CDY26946	Canola	plastid	63.76	65.41
Bra002423.1-P	Field mustard	plastid	64.68	65.28
CDY59281	Canola	plastid	63.53	65.18
CDY22692	Canola	plastid	62.39	64.92
Bra020203.1-P	Field mustard	plastid	64.22	64.81
Bra019468.1-P	Field mustard	plastid	57.34	64.77
CDY30932	Canola	plastid	56.65	63.99
CDX77841	Canola	plastid	55.73	62.79
Os07t0694600-01	Rice	plastid	45.64	54.67
Os03t0286200-01	Rice	plastid	47.25	51.63
Os10t0523700-01	Rice	plastid	34.86	37.25
Os07t0512000-01	Rice	mitochondrion	23.39	32.9

Protein Annotations

KEGG:00400+4.2.1.51	Gene3D:3.30.70.260	Gene3D:3.40.190.10	MapMan:4.1.5.2.4	EntrezGene:4335756	InterPro:ACT_dom
EMBL:AK103609	ProteinID:BAF14630.1	ProteinID:BAS89086.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004664
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152
GO:GO:0008652	GO:GO:0009058	GO:GO:0009073	GO:GO:0009094	GO:GO:0009507	GO:GO:0009536
GO:GO:0009570	GO:GO:0009987	GO:GO:0016829	GO:GO:0047769	InterPro:IPR001086	InterPro:IPR002912
EnsemblPlantsGene:Os04g0406600	EnsemblPlants:Os04t0406600-01	PFAM:PF00800	ScanProsite:PS00857	ScanProsite:PS00858	PFscan:PS51171
PFscan:PS51671	PANTHER:PTHR21022	PANTHER:PTHR21022:SF13	InterPro:Preph_deHydtase	InterPro:Preph_deHydtase_CS	UniProt:Q0JDF7
SUPFAM:SSF53850	SUPFAM:SSF55021	UniParc:UPI0000DD907B	RefSeq:XP_015637196.1	SEG:seg	:

Description

Prephenate dehydratase domain containing protein. (Os04t0406600-01)

Coordinates

chr4:+:20169585..20171246

Molecular Weight (calculated)

46115.0 Da

IEP (calculated)

6.623

GRAVY (calculated)

0.012

Length

436 amino acids

Sequence
(BLAST)

001: MAAASLIKAP VGQNPARMGA GRSSGGGGVV RCSLQGAVVG GRAEWQSSCA VLSSKVAALG AASPHAAAPS FVNGHVAPLV PEQQAAAEDG GAVLDLVPVS
101: SVNGGGVAKN LPQPLRISDL SPAPMHGSQL RVAYQGVPGA YSEKAAGKAY PGCDAIPCDQ FEVAFSAVEL WIADRAVLPV ENSLGGSIHR NYDLLLRHRL
201: HIVGEVQLPV HHCLMALPGV RKECLTRVMS HPQALAQCEH TLTAMGLNVV REAFDDTAGA AEYVAANGLR DTAAIASSRA AELYGMEVLA DGIQDDCGNV
301: TRFVMLAREP IVPRTDRPFK TSIVFAHDKE GTSVLFKVLS AFAFRDITLT KIESRPHRHR PIRLVDDANV GTAKHFEYMF YVDFQASLAE PRAQNALAEV
401: QEYTSFLRVL GSYPMDMTPM TAGSSSTVTS DDSSST

Best Arabidopsis Sequence Match ( AT1G08250.1 )
(BLAST)

001: MKALSSSSPI LGASQPATAT ALIARSGRSE WQSSCAILTS KVISQEESES LPVPPVSGGV DHLNGHNSAA ARVPGMNLVP IEKSDSNPLV PQHRHNPLKP
101: LSMTDLSPAP MHGSNLRVAY QGVPGAYSEA AAGKAYPNCQ AIPCDQFEVA FQAVELWIAD RAVLPVENSL GGSIHRNYDL LLRHRLHIVG EVQLPVHHCL
201: LALPGVRKEF LTRVISHPQG LAQCEHTLTK LGLNVAREAV DDTAGAAEFI ASNNLRDTAA IASARAAEIY GLEILEDGIQ DDVSNVTRFV MLAREPIIPR
301: TDRPFKTSIV FAHEKGTSVL FKVLSAFAFR DISLTKIESR PNHNRPIRVV DDANVGTAKH FEYMFYVDFE ASMAEARAQN ALAEVQEFTS FLRVLGSYPM
401: DMTPWSPTSS TSS

Arabidopsis Description

ADT6Arogenate dehydratase [Source:UniProtKB/TrEMBL;Acc:A0A178W954]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.