Factsheet for Solyc06g074530.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g091710.2.1
Solyc05g053250.2.1
Solyc06g074530.1.1
Solyc11g066890.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G44720.1	Solyc06g074530.1.1	AT3G44720.1	21798944
AT3G44720.1	Solyc11g066890.1.1	AT3G44720.1	21798944
AT3G44720.1	Solyc05g053250.2.1	AT3G54826.1	21798944
AT3G44720.1	Solyc02g091710.2.1	AT5G65683.1	21798944
AT5G22630.1	Solyc06g074530.1.1	AT3G44720.1	21798944
AT5G22630.1	Solyc11g066890.1.1	AT3G44720.1	21798944
AT5G22630.1	Solyc06g074530.1.1	AT5G22630.1	21798944
AT5G22630.1	Solyc11g066890.1.1	AT5G22630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018339	Potato	plastid	97.69	97.69
Solyc11g066890.1.1	Tomato	plastid	86.84	88.06
GSMUA_Achr8P07590_001	Banana	cytosol	53.35	81.05
KRH26581	Soybean	plastid	78.06	79.53
KRH22725	Soybean	plastid	77.14	78.77
KRH30513	Soybean	plastid	75.75	76.64
KRH25168	Soybean	plastid	75.52	76.4
HORVU2Hr1G072210.1	Barley	cytosol, mitochondrion, plastid	62.12	75.99
Os09t0565700-01	Rice	plastid	68.59	74.06
AT5G22630.1	Thale cress	plastid	72.29	73.65
Zm00001d005351_P001	Maize	plastid	71.36	73.22
CDX92343	Canola	plastid	71.59	72.94
Os09t0566050-00	Rice	plastid	68.36	72.73
CDY26946	Canola	plastid	70.9	72.24
TraesCS2D01G290000.1	Wheat	plastid	69.05	72.22
TraesCS2B01G308500.1	Wheat	plastid	69.05	72.22
Bra002423.1-P	Field mustard	plastid	72.06	72.22
Zm00001d025333_P001	Maize	plastid	69.75	72.08
Zm00001d003830_P001	Maize	plastid	70.9	72.07
CDY09152	Canola	plastid	70.67	72.0
TraesCS2A01G292000.1	Wheat	plastid	68.82	71.98
TraesCS5B01G372500.1	Wheat	plastid	69.75	71.9
CDY59281	Canola	plastid	70.44	71.76
HORVU5Hr1G092190.1	Barley	plastid	70.44	71.6
TraesCS5A01G370200.1	Wheat	plastid	69.75	71.56
TraesCS5D01G379700.1	Wheat	plastid	69.75	71.39
Bra020203.1-P	Field mustard	plastid	70.9	71.06
EES10725	Sorghum	plastid	70.67	70.83
Os04t0406600-01	Rice	plastid	71.13	70.64
Bra019468.1-P	Field mustard	plastid	62.82	70.47
AT3G44720.1	Thale cress	plastid	68.82	70.28
TraesCS2B01G308400.1	Wheat	plastid	67.9	70.17
EER96348	Sorghum	plastid	70.9	70.09
CDY30932	Canola	plastid	62.12	69.69
CDX77841	Canola	plastid	61.89	69.25
TraesCS2D01G289900.2	Wheat	plastid	66.51	69.23
GSMUA_AchrUn_...	Banana	plastid	61.89	67.34
GSMUA_Achr3P22810_001	Banana	plastid	59.58	65.98
GSMUA_Achr8P33080_001	Banana	plastid	66.05	65.6
GSMUA_Achr10P...	Banana	plastid	31.18	64.9
TraesCS2A01G291900.1	Wheat	plastid	67.21	62.58
HORVU2Hr1G072180.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	66.28	62.39
Solyc02g080620.2.1	Tomato	plastid	51.27	55.5
Solyc11g072520.1.1	Tomato	plastid	49.65	54.71

Protein Annotations

KEGG:00400+4.2.1.51	Gene3D:3.30.70.260	Gene3D:3.40.190.10	MapMan:4.1.5.2.4	InterPro:ACT_dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0004664	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009073	GO:GO:0009094
GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0016829	GO:GO:0047769
InterPro:IPR001086	InterPro:IPR002912	UniProt:K4C9H1	PFAM:PF00800	ScanProsite:PS00857	ScanProsite:PS00858
PFscan:PS51171	PFscan:PS51671	PANTHER:PTHR21022	PANTHER:PTHR21022:SF14	InterPro:Preph_deHydtase	InterPro:Preph_deHydtase_CS
SUPFAM:SSF53850	SUPFAM:SSF55021	EnsemblPlantsGene:Solyc06g074530.1	EnsemblPlants:Solyc06g074530.1.1	UniParc:UPI00027665AF	SEG:seg

Description

Arogenate dehydratase [Source:UniProtKB/TrEMBL;Acc:K4C9H1]

Coordinates

chr6:+:46112970..46114271

Molecular Weight (calculated)

47186.3 Da

IEP (calculated)

6.987

GRAVY (calculated)

-0.094

Length

433 amino acids

Sequence
(BLAST)

001: MHTIAPSSGV TLKSLVQQTS PPPAQISRFV PARLVVQCGY RFDSANTNAS TVNTNGIPAS NNFAGHVGAS RADWQSSCAI LASKVVSQQQ DTEKTGGAGE
101: ITVVNGHKSL DLVPLDNNLP KPLTITDLSP APMHGSQLRV AYQGVPGAYS EAAAGKAYPK CEAIPCDQFE VAFQAVELWI ADRAVLPVEN SLGGSIHRNY
201: DLLLRHRLHI VGEVQLPVHH CLLALPGVRK EYLTRVISHP QALAQCELTL TKLGLNVVRE AVDDTAGAAE YIAANNLRDT AAIASARAAE LYGLQILSEG
301: IQDDSSNVTR FVMLAREPII PRTDRPFKTS IVFAHDKGTS VLFKVLSAFA FRNISLTKIE SRPHRNRPIR LVDDANVGTA KHFEYMFYVD FEASMADVRA
401: QNALAEVQEF TSFLRVLGSY PMDMTPWCPS REE

Best Arabidopsis Sequence Match ( AT1G08250.1 )
(BLAST)

001: MKALSSSSPI LGASQPATAT ALIARSGRSE WQSSCAILTS KVISQEESES LPVPPVSGGV DHLNGHNSAA ARVPGMNLVP IEKSDSNPLV PQHRHNPLKP
101: LSMTDLSPAP MHGSNLRVAY QGVPGAYSEA AAGKAYPNCQ AIPCDQFEVA FQAVELWIAD RAVLPVENSL GGSIHRNYDL LLRHRLHIVG EVQLPVHHCL
201: LALPGVRKEF LTRVISHPQG LAQCEHTLTK LGLNVAREAV DDTAGAAEFI ASNNLRDTAA IASARAAEIY GLEILEDGIQ DDVSNVTRFV MLAREPIIPR
301: TDRPFKTSIV FAHEKGTSVL FKVLSAFAFR DISLTKIESR PNHNRPIRVV DDANVGTAKH FEYMFYVDFE ASMAEARAQN ALAEVQEFTS FLRVLGSYPM
401: DMTPWSPTSS TSS

Arabidopsis Description

ADT6Arogenate dehydratase [Source:UniProtKB/TrEMBL;Acc:A0A178W954]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.