Factsheet for TraesCS5D01G379700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G045100.1
TraesCS2A01G291900.1
TraesCS2A01G292000.1
TraesCS2B01G057300.1
TraesCS2B01G308400.1
TraesCS2B01G308500.1
TraesCS2D01G043700.1
TraesCS2D01G289900.2
TraesCS2D01G290000.1
TraesCS5A01G370200.1
TraesCS5B01G372500.1
TraesCS5D01G379700.1
TraesCS6A01G395100.1
TraesCS6B01G435000.1
TraesCS6D01G380400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G44720.1	TraesCS2A01G291900.1	AT3G44720.1	21798944
AT3G44720.1	TraesCS2A01G292000.1	AT3G44720.1	21798944
AT3G44720.1	TraesCS2B01G308400.1	AT3G44720.1	21798944
AT3G44720.1	TraesCS2B01G308500.1	AT3G44720.1	21798944
AT3G44720.1	TraesCS2D01G289900.2	AT3G44720.1	21798944
AT3G44720.1	TraesCS2D01G290000.1	AT3G44720.1	21798944
AT3G44720.1	TraesCS5A01G370200.1	AT3G44720.1	21798944
AT3G44720.1	TraesCS5B01G372500.1	AT3G44720.1	21798944
AT3G44720.1	TraesCS5D01G379700.1	AT3G44720.1	21798944
AT3G44720.1	TraesCS6A01G395100.1	AT3G54826.1	21798944
AT3G44720.1	TraesCS6B01G435000.1	AT3G54826.1	21798944
AT3G44720.1	TraesCS6D01G380400.1	AT3G54826.1	21798944
AT3G44720.1	TraesCS2A01G045100.1	AT5G65683.1	21798944
AT3G44720.1	TraesCS2B01G057300.1	AT5G65683.1	21798944
AT3G44720.1	TraesCS2D01G043700.1	AT5G65683.1	21798944
AT5G22630.1	TraesCS2A01G291900.1	AT3G44720.1	21798944
AT5G22630.1	TraesCS2A01G292000.1	AT3G44720.1	21798944
AT5G22630.1	TraesCS2B01G308400.1	AT3G44720.1	21798944
AT5G22630.1	TraesCS2B01G308500.1	AT3G44720.1	21798944
AT5G22630.1	TraesCS2D01G289900.2	AT3G44720.1	21798944
AT5G22630.1	TraesCS2D01G290000.1	AT3G44720.1	21798944
AT5G22630.1	TraesCS5A01G370200.1	AT3G44720.1	21798944
AT5G22630.1	TraesCS5B01G372500.1	AT3G44720.1	21798944
AT5G22630.1	TraesCS5D01G379700.1	AT3G44720.1	21798944
AT5G22630.1	TraesCS2A01G291900.1	AT5G22630.1	21798944
AT5G22630.1	TraesCS2A01G292000.1	AT5G22630.1	21798944
AT5G22630.1	TraesCS2B01G308400.1	AT5G22630.1	21798944
AT5G22630.1	TraesCS2B01G308500.1	AT5G22630.1	21798944
AT5G22630.1	TraesCS2D01G289900.2	AT5G22630.1	21798944
AT5G22630.1	TraesCS2D01G290000.1	AT5G22630.1	21798944
AT5G22630.1	TraesCS5A01G370200.1	AT5G22630.1	21798944
AT5G22630.1	TraesCS5B01G372500.1	AT5G22630.1	21798944
AT5G22630.1	TraesCS5D01G379700.1	AT5G22630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G370200.1	Wheat	plastid	97.4	97.63
TraesCS5B01G372500.1	Wheat	plastid	96.45	97.14
HORVU5Hr1G092190.1	Barley	plastid	95.27	94.6
Zm00001d005351_P001	Maize	plastid	80.38	80.57
Os09t0566050-00	Rice	plastid	75.65	78.62
EER96348	Sorghum	plastid	81.32	78.54
Os09t0565700-01	Rice	plastid	74.23	78.3
TraesCS2D01G290000.1	Wheat	plastid	71.87	73.43
VIT_06s0061g01300.t01	Wine grape	mitochondrion, plastid	70.69	72.75
TraesCS2D01G289900.2	Wheat	plastid	69.5	70.67
AT1G08250.1	Thale cress	plastid	68.79	70.46
CDY06307	Canola	cytosol	65.48	70.3
KRH22725	Soybean	plastid	70.45	70.28
Solyc11g066890.1.1	Tomato	plastid	70.92	70.26
KRH26581	Soybean	plastid	70.45	70.12
CDY30526	Canola	plastid	69.27	70.1
Bra034372.1-P	Field mustard	plastid	69.27	70.1
Solyc06g074530.1.1	Tomato	plastid	71.39	69.75
PGSC0003DMT400018339	Potato	plastid	71.39	69.75
AT2G27820.1	Thale cress	plastid	69.74	69.58
Bra031620.1-P	Field mustard	cytosol	64.78	69.54
CDX77139	Canola	plastid	69.5	69.01
PGSC0003DMT400068261	Potato	plastid	70.21	68.59
KRH30513	Soybean	plastid	69.03	68.22
KRH25168	Soybean	plastid	68.79	67.99
CDY22691	Canola	cytosol	66.43	67.22
CDY72678	Canola	plastid	64.78	65.39
AT3G44720.1	Thale cress	plastid	65.48	65.33
Bra031619.1-P	Field mustard	plastid	64.3	64.92
AT5G22630.1	Thale cress	plastid	65.01	64.71
CDY09152	Canola	plastid	64.78	64.47
CDX92343	Canola	plastid	64.78	64.47
CDY22692	Canola	plastid	63.83	64.44
CDY59281	Canola	plastid	64.54	64.24
CDY26946	Canola	plastid	64.54	64.24
Bra002423.1-P	Field mustard	plastid	65.25	63.89
Bra020203.1-P	Field mustard	plastid	64.78	63.43
Bra019468.1-P	Field mustard	plastid	57.21	62.69
CDY30932	Canola	plastid	56.5	61.92
CDX77841	Canola	plastid	56.5	61.76
TraesCS2D01G080100.1	Wheat	plastid	49.65	54.97
TraesCS4D01G198400.1	Wheat	plastid	47.28	50.13
TraesCS4D01G198200.1	Wheat	plastid	44.44	47.24
TraesCS1D01G188500.1	Wheat	plastid	37.12	38.57

Protein Annotations

KEGG:00400+4.2.1.51	Gene3D:3.30.70.260	Gene3D:3.40.190.10	MapMan:4.1.5.2.4	InterPro:ACT_dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0004664	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009094
GO:GO:0009987	InterPro:IPR001086	InterPro:IPR002912	PFAM:PF00800	ScanProsite:PS00857	ScanProsite:PS00858
PFscan:PS51171	PFscan:PS51671	PANTHER:PTHR21022	PANTHER:PTHR21022:SF13	InterPro:Preph_deHydtase	InterPro:Preph_deHydtase_CS
SUPFAM:SSF53850	SUPFAM:SSF55021	EnsemblPlantsGene:TraesCS5D01G379700	EnsemblPlants:TraesCS5D01G379700.1	TIGR:cd04905	TIGR:cd13631
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5D:+:450577620..450578891

Molecular Weight (calculated)

45152.7 Da

IEP (calculated)

6.885

GRAVY (calculated)

-0.089

Length

423 amino acids

Sequence
(BLAST)

001: MEAAAAIRGT AAPRMRLAGR SSRGSGTAAA RAIPASRSDW QTACAILSST NDTPAPPAPK VNGQNNNNKL AAPAVPGSED AVSGLDLVPA AGAGNLPRPL
101: SISDLSPAPL HGAQLRVAYQ GVPGAYSEAA AGKAYPGCEA IPCDQFEVAF QAVELWIADR AVLPVENSLG GSIHRNYDLL LRHRLHIVGE VQLPVHHCLL
201: ALPGVRRELL ARVISHPQAL AQCEHTLTRM GLNVAREAFD DTAGAAEHIA AHALRDTAAI ASARAAELYG LQVLADGVQD DAGNVTRFVM LAREPIIPRT
301: DRPFKTSIVL AHDLEGTSVL FKVLSAFAFR DISLTKIESR PHRHRPIRLV DDANIGTAKH FEYMFYIDFQ ASMADVRAQN ALAEIQEFTS FLRVLGSYPM
401: DMTPWDAAPS PGSPSASDQQ QRG

Best Arabidopsis Sequence Match ( AT1G08250.1 )
(BLAST)

001: MKALSSSSPI LGASQPATAT ALIARSGRSE WQSSCAILTS KVISQEESES LPVPPVSGGV DHLNGHNSAA ARVPGMNLVP IEKSDSNPLV PQHRHNPLKP
101: LSMTDLSPAP MHGSNLRVAY QGVPGAYSEA AAGKAYPNCQ AIPCDQFEVA FQAVELWIAD RAVLPVENSL GGSIHRNYDL LLRHRLHIVG EVQLPVHHCL
201: LALPGVRKEF LTRVISHPQG LAQCEHTLTK LGLNVAREAV DDTAGAAEFI ASNNLRDTAA IASARAAEIY GLEILEDGIQ DDVSNVTRFV MLAREPIIPR
301: TDRPFKTSIV FAHEKGTSVL FKVLSAFAFR DISLTKIESR PNHNRPIRVV DDANVGTAKH FEYMFYVDFE ASMAEARAQN ALAEVQEFTS FLRVLGSYPM
401: DMTPWSPTSS TSS

Arabidopsis Description

ADT6Arogenate dehydratase [Source:UniProtKB/TrEMBL;Acc:A0A178W954]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.