CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72678	Canola	plastid	95.94	95.94
CDY06307	Canola	cytosol	73.75	78.43
CDY22691	Canola	cytosol	74.94	75.12
GSMUA_Achr8P07590_001	Banana	cytosol	50.84	74.74
AT1G08250.1	Thale cress	plastid	73.27	74.33
CDY30526	Canola	plastid	72.31	72.49
CDX77139	Canola	plastid	72.08	70.89
VIT_06s0061g01300.t01	Wine grape	mitochondrion, plastid	68.97	70.32
HORVU2Hr1G072210.1	Barley	cytosol, mitochondrion, plastid	57.76	68.36
KRH26581	Soybean	plastid	68.5	67.53
KRH22725	Soybean	plastid	68.02	67.22
Os09t0565700-01	Rice	plastid	63.72	66.58
KRH25168	Soybean	plastid	67.06	65.65
Os09t0566050-00	Rice	plastid	63.72	65.6
TraesCS5B01G372500.1	Wheat	plastid	64.92	64.76
TraesCS2A01G292000.1	Wheat	plastid	63.72	64.49
TraesCS2B01G308500.1	Wheat	plastid	63.72	64.49
TraesCS2D01G290000.1	Wheat	plastid	63.72	64.49
TraesCS5A01G370200.1	Wheat	plastid	64.92	64.45
CDX88512	Canola	plastid	19.33	64.29
KRH30513	Soybean	plastid	65.63	64.25
TraesCS5D01G379700.1	Wheat	plastid	64.44	63.83
Zm00001d025333_P001	Maize	plastid	63.72	63.72
Zm00001d003830_P001	Maize	plastid	64.68	63.62
HORVU5Hr1G092190.1	Barley	plastid	64.68	63.62
Zm00001d005351_P001	Maize	plastid	63.72	63.27
TraesCS2B01G308400.1	Wheat	plastid	62.77	62.77
EES10725	Sorghum	plastid	64.44	62.5
Os04t0406600-01	Rice	plastid	64.92	62.39
TraesCS2D01G289900.2	Wheat	plastid	61.58	62.02
EER96348	Sorghum	plastid	64.44	61.64
CDX92343	Canola	plastid	62.05	61.18
CDY09152	Canola	plastid	62.05	61.18
CDY26946	Canola	plastid	62.05	61.18
CDY59281	Canola	plastid	61.58	60.71
GSMUA_Achr3P22810_001	Banana	plastid	56.32	60.36
GSMUA_Achr10P...	Banana	plastid	29.83	60.1
CDY30932	Canola	plastid	54.65	59.33
CDX77841	Canola	plastid	54.65	59.17
GSMUA_Achr8P33080_001	Banana	plastid	60.62	58.26
GSMUA_AchrUn_...	Banana	plastid	55.13	58.04
HORVU2Hr1G072180.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	62.29	56.74
TraesCS2A01G291900.1	Wheat	plastid	62.53	56.34
CDY28030	Canola	plastid	47.49	52.93
CDY35951	Canola	plastid	47.73	52.77
CDX98196	Canola	extracellular	11.69	52.13
CDX74036	Canola	plastid	46.3	51.19
CDY31213	Canola	mitochondrion	46.3	50.79
CDX75178	Canola	cytosol	8.35	50.72
CDY21012	Canola	mitochondrion	46.3	50.65
CDY07984	Canola	plastid	45.35	50.13
CDY19368	Canola	cytosol	47.49	27.49

Protein Annotations

KEGG:00400+4.2.1.51	Gene3D:3.30.70.260	Gene3D:3.40.190.10	MapMan:4.1.5.2.4	GO:A0A078GCB4	UniProt:A0A078GCB4
InterPro:ACT_dom	EnsemblPlants:CDY22692	ProteinID:CDY22692	ProteinID:CDY22692.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004664	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009073	GO:GO:0009094	GO:GO:0009507
GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0016829	GO:GO:0047769	EnsemblPlantsGene:GSBRNA2T00019365001
InterPro:IPR001086	InterPro:IPR002912	PFAM:PF00800	ScanProsite:PS00857	ScanProsite:PS00858	PFscan:PS51171
PFscan:PS51671	PANTHER:PTHR21022	PANTHER:PTHR21022:SF14	MetaCyc:PWY-7432	InterPro:Preph_deHydtase	InterPro:Preph_deHydtase_CS
SUPFAM:SSF53850	SUPFAM:SSF55021	UniPathway:UPA00121	UniParc:UPI0004EB4AFE	SEG:seg	:

Description

BnaC08g43260DArogenate dehydratase [Source:UniProtKB/TrEMBL;Acc:A0A078GCB4]

Coordinates

chrLK032134:+:506261..507520

Molecular Weight (calculated)

45986.1 Da

IEP (calculated)

8.859

GRAVY (calculated)

-0.195

Length

419 amino acids

Sequence
(BLAST)

001: MKVIAPSHLK LMFGSSQPTS RSYPCVQNAQ RSDSCGTSRS EWRSTFATLT SKVVTQKTLP MPQVSVGIDH VNGHNRAARV LGMNQKPLSV NDLPPAPMHG
101: GANLRVAYQG APGAYSEAAA CKAYPNYEAV PCDQFEVAFQ AVELWIADRA VLPIENSLGG SIHRNYDLLL RHCLHIVGEV QLPVHHCLLA LPGVRKEFLT
201: CVMSHPQGLA QCERTLTKLG LNVTRKAVDN TAIAAEHIAA NNLRDTAAIA SARAADIYGL EILEDGLQDD ASNVTRFVML ARDPLVPRTD RPFKTSIVFA
301: HEKGTSVLYK VLSAFAARDI SLTKIESRPN HNRPIRLVDD ANVGTAKHFE YMFYIDFEAS MAEARVQNAL SEVRKFTSFL RVLGSYPMDM TPWSPSSSTS
401: HKASSKMNHS YGNVNMAKP

Best Arabidopsis Sequence Match ( AT1G08250.1 )
(BLAST)

001: MKALSSSSPI LGASQPATAT ALIARSGRSE WQSSCAILTS KVISQEESES LPVPPVSGGV DHLNGHNSAA ARVPGMNLVP IEKSDSNPLV PQHRHNPLKP
101: LSMTDLSPAP MHGSNLRVAY QGVPGAYSEA AAGKAYPNCQ AIPCDQFEVA FQAVELWIAD RAVLPVENSL GGSIHRNYDL LLRHRLHIVG EVQLPVHHCL
201: LALPGVRKEF LTRVISHPQG LAQCEHTLTK LGLNVAREAV DDTAGAAEFI ASNNLRDTAA IASARAAEIY GLEILEDGIQ DDVSNVTRFV MLAREPIIPR
301: TDRPFKTSIV FAHEKGTSVL FKVLSAFAFR DISLTKIESR PNHNRPIRVV DDANVGTAKH FEYMFYVDFE ASMAEARAQN ALAEVQEFTS FLRVLGSYPM
401: DMTPWSPTSS TSS

Arabidopsis Description

ADT6Arogenate dehydratase [Source:UniProtKB/TrEMBL;Acc:A0A178W954]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.