Factsheet for Zm00001d005351_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003830_P001
Zm00001d004553_P001
Zm00001d005351_P001
Zm00001d018501_P001
Zm00001d024940_P001
Zm00001d025333_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G44720.1	Zm00001d003830_P001	AT3G44720.1	21798944
AT3G44720.1	Zm00001d005351_P001	AT3G44720.1	21798944
AT3G44720.1	Zm00001d025333_P001	AT3G44720.1	21798944
AT3G44720.1	Zm00001d018501_P001	AT3G54826.1	21798944
AT3G44720.1	Zm00001d004553_P001	AT5G65683.1	21798944
AT3G44720.1	Zm00001d024940_P001	AT5G65683.1	21798944
AT5G22630.1	Zm00001d003830_P001	AT3G44720.1	21798944
AT5G22630.1	Zm00001d005351_P001	AT3G44720.1	21798944
AT5G22630.1	Zm00001d025333_P001	AT3G44720.1	21798944
AT5G22630.1	Zm00001d003830_P001	AT5G22630.1	21798944
AT5G22630.1	Zm00001d005351_P001	AT5G22630.1	21798944
AT5G22630.1	Zm00001d025333_P001	AT5G22630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER96348	Sorghum	plastid	95.73	92.24
Os09t0565700-01	Rice	plastid	78.91	83.04
Os09t0566050-00	Rice	plastid	79.15	82.06
TraesCS5B01G372500.1	Wheat	plastid	80.33	80.71
TraesCS5D01G379700.1	Wheat	plastid	80.57	80.38
TraesCS5A01G370200.1	Wheat	plastid	80.33	80.33
HORVU5Hr1G092190.1	Barley	plastid	80.81	80.05
VIT_06s0061g01300.t01	Wine grape	mitochondrion, plastid	72.27	74.21
Zm00001d025333_P001	Maize	plastid	72.99	73.51
Zm00001d003830_P001	Maize	plastid	74.17	73.47
Solyc11g066890.1.1	Tomato	plastid	72.51	71.66
Solyc06g074530.1.1	Tomato	plastid	73.22	71.36
KRH26581	Soybean	plastid	71.8	71.29
KRH22725	Soybean	plastid	71.33	70.99
PGSC0003DMT400018339	Potato	plastid	72.75	70.9
CDY06307	Canola	cytosol	65.64	70.3
AT1G08250.1	Thale cress	plastid	68.72	70.22
PGSC0003DMT400068261	Potato	plastid	72.04	70.21
CDY30526	Canola	plastid	69.19	69.86
Bra034372.1-P	Field mustard	plastid	68.96	69.62
Bra031620.1-P	Field mustard	cytosol	64.93	69.54
KRH30513	Soybean	plastid	69.91	68.93
KRH25168	Soybean	plastid	69.91	68.93
AT2G27820.1	Thale cress	plastid	69.19	68.87
CDX77139	Canola	plastid	68.96	68.31
CDY22691	Canola	cytosol	67.06	67.7
AT5G22630.1	Thale cress	plastid	66.11	65.65
CDX92343	Canola	plastid	65.64	65.18
AT3G44720.1	Thale cress	plastid	65.4	65.09
CDY26946	Canola	plastid	65.4	64.94
CDY72678	Canola	plastid	64.22	64.68
CDY59281	Canola	plastid	64.93	64.47
CDY09152	Canola	plastid	64.93	64.47
Bra002423.1-P	Field mustard	plastid	65.88	64.35
Bra031619.1-P	Field mustard	plastid	63.74	64.2
CDY22692	Canola	plastid	63.27	63.72
Bra020203.1-P	Field mustard	plastid	64.93	63.43
Bra019468.1-P	Field mustard	plastid	57.58	62.95
CDX77841	Canola	plastid	57.11	62.27
CDY30932	Canola	plastid	56.87	62.18
Zm00001d047755_P006	Maize	plastid	46.68	50.26
Zm00001d021611_P001	Maize	cytosol	33.41	46.69
Zm00001d028712_P007	Maize	plastid	45.26	44.63
Zm00001d048561_P001	Maize	plastid	37.91	41.24

Protein Annotations

KEGG:00400+4.2.1.51	Gene3D:3.30.70.260	Gene3D:3.40.190.10	MapMan:4.1.5.2.4	UniProt:A0A1D6ELY8	InterPro:ACT_dom
GO:GO:0003674	GO:GO:0003824	GO:GO:0004664	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009073
GO:GO:0009094	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0016829
GO:GO:0047769	InterPro:IPR001086	InterPro:IPR002912	ProteinID:ONM20892.1	PFAM:PF00800	ScanProsite:PS00857
ScanProsite:PS00858	PFscan:PS51171	PFscan:PS51671	PANTHER:PTHR21022	PANTHER:PTHR21022:SF14	InterPro:Preph_deHydtase
InterPro:Preph_deHydtase_CS	SUPFAM:SSF53850	SUPFAM:SSF55021	UniParc:UPI0001CAABE6	EnsemblPlantsGene:Zm00001d005351	EnsemblPlants:Zm00001d005351_P001
EnsemblPlants:Zm00001d005351_T001	SEG:seg	:	:	:	:

Description

Arogenate dehydratase/prephenate dehydratase 6 chloroplastic

Coordinates

chr2:-:170643478..170644746

Molecular Weight (calculated)

45546.1 Da

IEP (calculated)

6.624

GRAVY (calculated)

-0.053

Length

422 amino acids

Sequence
(BLAST)

001: MDAAALLDAF SAAPRHQLRP AAWCRSTRFA SQACRATAPF ARADWQAACA ILASNSTGGA GHDASSNNNA QPAPRVNGQK PPPALEATPT PDELDLVPVS
101: NLPRPLSISD LSPAPMHGSQ LRVAYQGVPG AYSEAAAAKA YPGCDAIPCD QFEVAFQAVE LWIADRAVLP VENSLGGSIH RNYDLLLRHR LHIVGEVQLP
201: VHHCLLALPG VRRELLTRVI SHPQALAQCE LTLNAMGLNV AREAFDDTAG AAEHIAAGGL RDTAAIASAR AAELYGLQVL AAGIQDDAGN VTRFVMLARE
301: PIIPRTDRPF KTSIVFAHDT DGTSVLFKVL SAFAFRDISL TKIESRPHRH RPIRLVDDAN VGTAKHFEYM FYIDFQASMA DVRAQNALAE IQEFTSFLRV
401: LGSYPMDMTP WDAALSSRAS QY

Best Arabidopsis Sequence Match ( AT1G08250.1 )
(BLAST)

001: MKALSSSSPI LGASQPATAT ALIARSGRSE WQSSCAILTS KVISQEESES LPVPPVSGGV DHLNGHNSAA ARVPGMNLVP IEKSDSNPLV PQHRHNPLKP
101: LSMTDLSPAP MHGSNLRVAY QGVPGAYSEA AAGKAYPNCQ AIPCDQFEVA FQAVELWIAD RAVLPVENSL GGSIHRNYDL LLRHRLHIVG EVQLPVHHCL
201: LALPGVRKEF LTRVISHPQG LAQCEHTLTK LGLNVAREAV DDTAGAAEFI ASNNLRDTAA IASARAAEIY GLEILEDGIQ DDVSNVTRFV MLAREPIIPR
301: TDRPFKTSIV FAHEKGTSVL FKVLSAFAFR DISLTKIESR PNHNRPIRVV DDANVGTAKH FEYMFYVDFE ASMAEARAQN ALAEVQEFTS FLRVLGSYPM
401: DMTPWSPTSS TSS

Arabidopsis Description

ADT6Arogenate dehydratase [Source:UniProtKB/TrEMBL;Acc:A0A178W954]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.