Factsheet for Zm00001d048561_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU92273	Sorghum	plastid	91.24	84.69
TraesCS1A01G188000.1	Wheat	plastid	84.02	81.91
HORVU1Hr1G048860.1	Barley	plastid	83.76	81.05
Os10t0523700-01	Rice	plastid	84.28	80.15
TraesCS1D01G188500.1	Wheat	plastid	84.02	80.1
TraesCS1B01G195800.2	Wheat	plastid	83.51	80.0
GSMUA_Achr1P03870_001	Banana	plastid	57.73	63.82
GSMUA_Achr3P18150_001	Banana	plastid	57.99	62.33
Zm00001d005351_P001	Maize	plastid	41.24	37.91
Zm00001d021611_P001	Maize	cytosol	29.12	37.42
Zm00001d025333_P001	Maize	plastid	39.95	36.99
Zm00001d003830_P001	Maize	plastid	39.95	36.38
Zm00001d047755_P006	Maize	plastid	34.54	34.18
Zm00001d028712_P007	Maize	plastid	33.51	30.37

Protein Annotations

KEGG:00400+4.2.1.51	Gene3D:3.30.70.260	Gene3D:3.40.190.10	MapMan:4.1.5.2.4	ProteinID:AQL10343.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004664	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009094
GO:GO:0009987	InterPro:IPR001086	UniProt:K7W3S8	PFAM:PF00800	ScanProsite:PS00857	PFscan:PS51171
PANTHER:PTHR21022	PANTHER:PTHR21022:SF2	InterPro:Preph_deHydtase	InterPro:Preph_deHydtase_CS	SUPFAM:SSF53850	SUPFAM:SSF55021
UniParc:UPI000221945D	EnsemblPlantsGene:Zm00001d048561	EnsemblPlants:Zm00001d048561_P001	EnsemblPlants:Zm00001d048561_T001	SEG:seg	:

Description

p-protein

Coordinates

chr9:+:158743478..158744834

Molecular Weight (calculated)

41193.7 Da

IEP (calculated)

9.002

GRAVY (calculated)

-0.012

Length

388 amino acids

Sequence
(BLAST)

001: MAYTSSLNLP KHLLLPSPRR TRHRPSSFVP TAAAKVNGDA PERPAPNGKA RINGQGKKGV NGHADRIHLS VSTGGGGQDG SGLRVAFQGA PGAYSEFAAK
101: TALPGCDTVP CRAFADALAA VERGGADRAI LPVESTMEGT ALRNYDLLLR HGLVVVQEIN LFVHYCLLAM PGVRAAEVRR VISHPMALAH CGRALARLGV
201: DREPVEDTAG AVEMLRSKRM LDTAAIASPR AADLYGLQVL AHGLQDESWN VTRFLLLSRP PSPVAVALGV DADAKTSMVV AHRGGSMVVV LKVLSAFSSR
301: NINLTKLEVI NNEGAGSGPG ERPPVVILDT SARGAPTLRA FPHVLYVDCE GAAHDPRVRE AIQEMERFAV FVRVLGCYAA DSTVYDLQ

Best Arabidopsis Sequence Match ( AT1G08250.1 )
(BLAST)

001: MKALSSSSPI LGASQPATAT ALIARSGRSE WQSSCAILTS KVISQEESES LPVPPVSGGV DHLNGHNSAA ARVPGMNLVP IEKSDSNPLV PQHRHNPLKP
101: LSMTDLSPAP MHGSNLRVAY QGVPGAYSEA AAGKAYPNCQ AIPCDQFEVA FQAVELWIAD RAVLPVENSL GGSIHRNYDL LLRHRLHIVG EVQLPVHHCL
201: LALPGVRKEF LTRVISHPQG LAQCEHTLTK LGLNVAREAV DDTAGAAEFI ASNNLRDTAA IASARAAEIY GLEILEDGIQ DDVSNVTRFV MLAREPIIPR
301: TDRPFKTSIV FAHEKGTSVL FKVLSAFAFR DISLTKIESR PNHNRPIRVV DDANVGTAKH FEYMFYVDFE ASMAEARAQN ALAEVQEFTS FLRVLGSYPM
401: DMTPWSPTSS TSS

Arabidopsis Description

ADT6Arogenate dehydratase [Source:UniProtKB/TrEMBL;Acc:A0A178W954]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.