Factsheet for PGSC0003DMT400068261

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 9

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400018339
PGSC0003DMT400068261
PGSC0003DMT400069831
PGSC0003DMT400078676

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G44720.1	PGSC0003DMT400018339	AT3G44720.1	21798944
AT3G44720.1	PGSC0003DMT400068261	AT3G44720.1	21798944
AT3G44720.1	PGSC0003DMT400069831	AT3G54826.1	21798944
AT3G44720.1	PGSC0003DMT400078676	AT5G65683.1	21798944
AT5G22630.1	PGSC0003DMT400018339	AT3G44720.1	21798944
AT5G22630.1	PGSC0003DMT400068261	AT3G44720.1	21798944
AT5G22630.1	PGSC0003DMT400018339	AT5G22630.1	21798944
AT5G22630.1	PGSC0003DMT400068261	AT5G22630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g066890.1.1	Tomato	plastid	95.84	97.19
PGSC0003DMT400018339	Potato	plastid	87.3	87.3
KRH26581	Soybean	plastid	79.21	80.71
KRH22725	Soybean	plastid	78.75	80.42
GSMUA_Achr8P07590_001	Banana	cytosol	52.66	80.0
KRH30513	Soybean	plastid	74.83	75.7
KRH25168	Soybean	plastid	74.83	75.7
HORVU2Hr1G072210.1	Barley	cytosol, mitochondrion, plastid	61.66	75.42
Os09t0565700-01	Rice	plastid	67.67	73.07
TraesCS2B01G308500.1	Wheat	plastid	69.28	72.46
TraesCS2D01G290000.1	Wheat	plastid	69.05	72.22
TraesCS2A01G292000.1	Wheat	plastid	69.05	72.22
Zm00001d025333_P001	Maize	plastid	69.75	72.08
Zm00001d005351_P001	Maize	plastid	70.21	72.04
Os09t0566050-00	Rice	plastid	67.67	71.99
Zm00001d003830_P001	Maize	plastid	70.44	71.6
AT5G22630.1	Thale cress	plastid	69.98	71.29
CDY26946	Canola	plastid	69.98	71.29
CDX92343	Canola	plastid	69.98	71.29
TraesCS5B01G372500.1	Wheat	plastid	68.82	70.95
HORVU5Hr1G092190.1	Barley	plastid	69.75	70.89
EES10725	Sorghum	plastid	70.44	70.6
CDY59281	Canola	plastid	69.28	70.59
TraesCS5A01G370200.1	Wheat	plastid	68.59	70.38
Bra002423.1-P	Field mustard	plastid	70.21	70.37
CDY09152	Canola	plastid	69.05	70.35
TraesCS5D01G379700.1	Wheat	plastid	68.59	70.21
Os04t0406600-01	Rice	plastid	70.44	69.95
TraesCS2B01G308400.1	Wheat	plastid	67.21	69.45
Bra020203.1-P	Field mustard	plastid	69.28	69.44
EER96348	Sorghum	plastid	69.98	69.18
Bra019468.1-P	Field mustard	plastid	61.66	69.17
TraesCS2D01G289900.2	Wheat	plastid	66.05	68.75
AT3G44720.1	Thale cress	plastid	67.21	68.63
CDY30932	Canola	plastid	60.97	68.39
CDX77841	Canola	plastid	60.97	68.22
GSMUA_AchrUn_...	Banana	plastid	60.74	66.08
GSMUA_Achr3P22810_001	Banana	plastid	58.89	65.22
GSMUA_Achr8P33080_001	Banana	plastid	64.9	64.45
GSMUA_Achr10P...	Banana	plastid	30.25	62.98
HORVU2Hr1G072180.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	66.05	62.17
TraesCS2A01G291900.1	Wheat	plastid	66.51	61.94
PGSC0003DMT400065276	Potato	plastid	51.04	55.81
PGSC0003DMT400042492	Potato	plastid	50.12	54.25

Protein Annotations

KEGG:00400+4.2.1.51	Gene3D:3.30.70.260	Gene3D:3.40.190.10	MapMan:4.1.5.2.4	InterPro:ACT_dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0004664	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009073	GO:GO:0009094
GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0016829	GO:GO:0047769
InterPro:IPR001086	InterPro:IPR002912	UniProt:M1CIQ0	PFAM:PF00800	EnsemblPlantsGene:PGSC0003DMG400026536	PGSC:PGSC0003DMG400026536
EnsemblPlants:PGSC0003DMT400068261	ScanProsite:PS00857	ScanProsite:PS00858	PFscan:PS51171	PFscan:PS51671	PANTHER:PTHR21022
PANTHER:PTHR21022:SF14	InterPro:Preph_deHydtase	InterPro:Preph_deHydtase_CS	SUPFAM:SSF53850	SUPFAM:SSF55021	UniParc:UPI00029506F8
SEG:seg	:	:	:	:	:

Description

Arogenate dehydratase 3 [Source:PGSC_GENE;Acc:PGSC0003DMG400026536]

Coordinates

chr11:-:39785964..39787265

Molecular Weight (calculated)

47189.5 Da

IEP (calculated)

8.087

GRAVY (calculated)

-0.114

Length

433 amino acids

Sequence
(BLAST)

001: MQSLTPSSSG INLKSLIRTK IQSNRVNPIR PVIRCVYRFD AANAAVNTGT ANTNSAGHVG GSRADWQSSC AILASKVVSQ QQNAEKSGGA GNITAVNGHK
101: ATMDLDLVPI DNQPKPLTIT DLSPAPMHGA QLRVAYQGVP GAYSEAAAGK AYPKCEAIPC DQFEVAFQAV ELWIADRAVL PVENSLGGSI HRNYDLLLRH
201: RLHIVGEVQL PVHHCLLALP GVRKEYLNRV ISHPQALAQC ELTLTKLGLN VTREAVDDTA GAAEYIASNN LRDTAAIASA RAADLYGLHI LAEGIQDDSS
301: NVTRFVMLAR EPIIPRTDRP FKTSIVFAHD KGTSVLFKVL SAFAFRNISL TKIESRPHRN RPIRLVDDAN VGTAKHFEYM FYVDFEASMA DVRAQNALAE
401: VQEFTSFLRV LGSYPMDMTP WCPSPPFYPL PPP

Best Arabidopsis Sequence Match ( AT1G08250.1 )
(BLAST)

001: MKALSSSSPI LGASQPATAT ALIARSGRSE WQSSCAILTS KVISQEESES LPVPPVSGGV DHLNGHNSAA ARVPGMNLVP IEKSDSNPLV PQHRHNPLKP
101: LSMTDLSPAP MHGSNLRVAY QGVPGAYSEA AAGKAYPNCQ AIPCDQFEVA FQAVELWIAD RAVLPVENSL GGSIHRNYDL LLRHRLHIVG EVQLPVHHCL
201: LALPGVRKEF LTRVISHPQG LAQCEHTLTK LGLNVAREAV DDTAGAAEFI ASNNLRDTAA IASARAAEIY GLEILEDGIQ DDVSNVTRFV MLAREPIIPR
301: TDRPFKTSIV FAHEKGTSVL FKVLSAFAFR DISLTKIESR PNHNRPIRVV DDANVGTAKH FEYMFYVDFE ASMAEARAQN ALAEVQEFTS FLRVLGSYPM
401: DMTPWSPTSS TSS

Arabidopsis Description

ADT6Arogenate dehydratase [Source:UniProtKB/TrEMBL;Acc:A0A178W954]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.