Factsheet for PGSC0003DMT400018339

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400018339
PGSC0003DMT400068261
PGSC0003DMT400069831
PGSC0003DMT400078676

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G44720.1	PGSC0003DMT400018339	AT3G44720.1	21798944
AT3G44720.1	PGSC0003DMT400068261	AT3G44720.1	21798944
AT3G44720.1	PGSC0003DMT400069831	AT3G54826.1	21798944
AT3G44720.1	PGSC0003DMT400078676	AT5G65683.1	21798944
AT5G22630.1	PGSC0003DMT400018339	AT3G44720.1	21798944
AT5G22630.1	PGSC0003DMT400068261	AT3G44720.1	21798944
AT5G22630.1	PGSC0003DMT400018339	AT5G22630.1	21798944
AT5G22630.1	PGSC0003DMT400068261	AT5G22630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g074530.1.1	Tomato	plastid	97.69	97.69
PGSC0003DMT400068261	Potato	plastid	87.3	87.3
GSMUA_Achr8P07590_001	Banana	cytosol	53.12	80.7
KRH26581	Soybean	plastid	78.29	79.76
KRH22725	Soybean	plastid	77.37	79.01
KRH30513	Soybean	plastid	75.75	76.64
KRH25168	Soybean	plastid	75.75	76.64
HORVU2Hr1G072210.1	Barley	cytosol, mitochondrion, plastid	62.36	76.27
Os09t0565700-01	Rice	plastid	68.36	73.82
AT5G22630.1	Thale cress	plastid	71.82	73.18
Zm00001d005351_P001	Maize	plastid	70.9	72.75
Zm00001d025333_P001	Maize	plastid	70.21	72.55
Zm00001d003830_P001	Maize	plastid	71.36	72.54
Os09t0566050-00	Rice	plastid	68.13	72.48
CDX92343	Canola	plastid	71.13	72.47
TraesCS2B01G308500.1	Wheat	plastid	69.28	72.46
TraesCS2D01G290000.1	Wheat	plastid	69.28	72.46
TraesCS2A01G292000.1	Wheat	plastid	69.05	72.22
TraesCS5B01G372500.1	Wheat	plastid	69.75	71.9
CDY26946	Canola	plastid	70.44	71.76
Bra002423.1-P	Field mustard	plastid	71.59	71.76
TraesCS5A01G370200.1	Wheat	plastid	69.75	71.56
CDY09152	Canola	plastid	70.21	71.53
TraesCS5D01G379700.1	Wheat	plastid	69.75	71.39
HORVU5Hr1G092190.1	Barley	plastid	70.21	71.36
CDY59281	Canola	plastid	69.98	71.29
EES10725	Sorghum	plastid	70.9	71.06
Os04t0406600-01	Rice	plastid	71.36	70.87
Bra020203.1-P	Field mustard	plastid	70.44	70.6
AT3G44720.1	Thale cress	plastid	69.05	70.52
Bra019468.1-P	Field mustard	plastid	62.82	70.47
TraesCS2B01G308400.1	Wheat	plastid	67.9	70.17
CDY30932	Canola	plastid	62.12	69.69
EER96348	Sorghum	plastid	70.44	69.63
TraesCS2D01G289900.2	Wheat	plastid	66.74	69.47
CDX77841	Canola	plastid	61.89	69.25
GSMUA_AchrUn_...	Banana	plastid	61.89	67.34
GSMUA_Achr3P22810_001	Banana	plastid	59.58	65.98
GSMUA_Achr8P33080_001	Banana	plastid	66.05	65.6
GSMUA_Achr10P...	Banana	plastid	31.18	64.9
HORVU2Hr1G072180.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	66.51	62.61
TraesCS2A01G291900.1	Wheat	plastid	67.21	62.58
PGSC0003DMT400065276	Potato	plastid	51.04	55.81
PGSC0003DMT400042492	Potato	plastid	51.27	55.5

Protein Annotations

KEGG:00400+4.2.1.51	EntrezGene:102599370	Gene3D:3.30.70.260	Gene3D:3.40.190.10	MapMan:4.1.5.2.4	InterPro:ACT_dom
GO:GO:0003674	GO:GO:0003824	GO:GO:0004664	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009073
GO:GO:0009094	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0016829
GO:GO:0047769	InterPro:IPR001086	InterPro:IPR002912	UniProt:M1AAG0	PFAM:PF00800	EnsemblPlantsGene:PGSC0003DMG400007122
PGSC:PGSC0003DMG400007122	EnsemblPlants:PGSC0003DMT400018339	ScanProsite:PS00857	ScanProsite:PS00858	PFscan:PS51171	PFscan:PS51671
PANTHER:PTHR21022	PANTHER:PTHR21022:SF14	InterPro:Preph_deHydtase	InterPro:Preph_deHydtase_CS	SUPFAM:SSF53850	SUPFAM:SSF55021
UniParc:UPI000294D226	RefSeq:XP_006347226.1	SEG:seg	:	:	:

Description

Arogenate dehydratase [Source:PGSC_GENE;Acc:PGSC0003DMG400007122]

Coordinates

chr6:+:55116164..55117713

Molecular Weight (calculated)

47248.4 Da

IEP (calculated)

7.194

GRAVY (calculated)

-0.107

Length

433 amino acids

Sequence
(BLAST)

001: MHTITPSSGV SLKSLVRQTS PPPGQINRFV PARLVVQCGY RFDSANTNAS TVHTNGVPAS NNFAGHVGAS RADWQSSCAI LASKVVSQQQ DTEKTGGAGE
101: ITVVNGHKTL DLVPIDNNLP KPLTITDLSP APLHGSQLRV AYQGVPGAYS EAAAGKAYPK CEAIPCDQFE VAFQAVELWI ADRAVLPVEN SLGGSIHRNY
201: DLLLRHRLHI VGEVQLPVHH CLLALPGVRK EYLTRVISHP QALAQCELTL TKLGLNVVRE AVDDTAGAAE YIAANNLRDT AAIASARAAE LYGLQILSEG
301: IQDDSSNVTR FVMLAREPII PRTDRPFKTS IVFAHDKGTS VLFKVLSAFA FRNISLTKIE SRPHRNRPIR LVDDANVGTA KHFEYMFYVD FEASMADVRA
401: QNALAEVQEF TSFLRVLGSY PMDMTPWCPS REE

Best Arabidopsis Sequence Match ( AT1G08250.1 )
(BLAST)

001: MKALSSSSPI LGASQPATAT ALIARSGRSE WQSSCAILTS KVISQEESES LPVPPVSGGV DHLNGHNSAA ARVPGMNLVP IEKSDSNPLV PQHRHNPLKP
101: LSMTDLSPAP MHGSNLRVAY QGVPGAYSEA AAGKAYPNCQ AIPCDQFEVA FQAVELWIAD RAVLPVENSL GGSIHRNYDL LLRHRLHIVG EVQLPVHHCL
201: LALPGVRKEF LTRVISHPQG LAQCEHTLTK LGLNVAREAV DDTAGAAEFI ASNNLRDTAA IASARAAEIY GLEILEDGIQ DDVSNVTRFV MLAREPIIPR
301: TDRPFKTSIV FAHEKGTSVL FKVLSAFAFR DISLTKIESR PNHNRPIRVV DDANVGTAKH FEYMFYVDFE ASMAEARAQN ALAEVQEFTS FLRVLGSYPM
401: DMTPWSPTSS TSS

Arabidopsis Description

ADT6Arogenate dehydratase [Source:UniProtKB/TrEMBL;Acc:A0A178W954]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.