Factsheet for PGSC0003DMT400069831

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 7
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001405
PGSC0003DMT400008101
PGSC0003DMT400013443
PGSC0003DMT400018339
PGSC0003DMT400026783
PGSC0003DMT400027703
PGSC0003DMT400062617
PGSC0003DMT400067603
PGSC0003DMT400068261

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54826.1	PGSC0003DMT400001405	AT3G27960.1	21798944
AT3G54826.1	PGSC0003DMT400026783	AT4G19700.1	21798944
AT3G54826.1	PGSC0003DMT400062617	AT4G19700.1	21798944
AT3G54826.1	PGSC0003DMT400008101	AT5G09590.1	22841711
AT3G54826.1	PGSC0003DMT400027703	AT5G09590.1	22841711
AT3G54826.1	PGSC0003DMT400067603	AT5G10810.1	21798944
AT3G54826.1	PGSC0003DMT400018339	AT5G22630.1	21798944
AT3G54826.1	PGSC0003DMT400068261	AT5G22630.1	21798944
AT3G54826.1	PGSC0003DMT400013443	AT5G51110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g053250.2.1	Tomato	mitochondrion	93.6	93.6
GSMUA_Achr4P04340_001	Banana	mitochondrion	50.25	54.26
VIT_13s0019g04580.t01	Wine grape	mitochondrion	50.25	53.12
KRH34848	Soybean	mitochondrion	48.77	52.66
KRG91929	Soybean	mitochondrion	48.28	51.85
Os02t0819700-01	Rice	mitochondrion	41.38	44.68
Zm00001d018501_P001	Maize	mitochondrion	38.42	41.71
TraesCS6B01G435000.1	Wheat	mitochondrion	38.42	40.41
Bra003197.1-P	Field mustard	mitochondrion	36.95	39.89
CDY07518	Canola	mitochondrion	36.95	39.68
CDX67612	Canola	mitochondrion	36.45	39.15
TraesCS6D01G380400.1	Wheat	mitochondrion	37.44	38.0
Bra007101.1-P	Field mustard	mitochondrion	36.45	37.76
AT3G54826.1	Thale cress	mitochondrion, plastid	37.93	34.53
EES07768	Sorghum	mitochondrion	38.92	32.92
HORVU6Hr1G091500.1	Barley	mitochondrion	37.44	32.07
CDX73445	Canola	plastid	36.45	32.03
TraesCS6A01G395100.1	Wheat	plastid	37.93	31.95
CDX78266	Canola	plastid	35.96	31.6

Protein Annotations

EnsemblPlants:PGSC0003DMT400069831	EnsemblPlantsGene:PGSC0003DMG400027152	EntrezGene:102604096	GO:GO:0003674	GO:GO:0005488	GO:GO:0008270
GO:GO:0046872	InterPro:IPR007853	InterPro:Mt_import_TIM15	InterPro:Znf_DNL-typ	PANTHER:PTHR20922	PANTHER:PTHR20922:SF13
PFAM:PF05180	PFscan:PS51501	PGSC:PGSC0003DMG400027152	RefSeq:XP_006355719.1	UniParc:UPI000295B991	UniProt:M1CL81
MapMan:35.2	:	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400027152]

Coordinates

chr5:+:48539197..48541710

Molecular Weight (calculated)

22440.8 Da

IEP (calculated)

7.613

GRAVY (calculated)

-0.300

Length

203 amino acids

Sequence
(BLAST)

001: MAARQIQRRI LSLLSTKTYI SQGLPWSSVS PARSAFGMNN ICSRRCFQTV TEITKQAVEV GESNKDCDPD TNTDSAAAVV SSIMKETTYK YTVQSNLKTS
101: PRHDLMMIFT CTVCETRTMK TVCRESYEKG VVVARCDGCK NIHLIADRLG WFGEPGSVED FLAARGEEVK KGCVDTLGFT LEDLAGKKSL ETIRGEVESK
201: SEI

Best Arabidopsis Sequence Match ( AT3G54826.1 )
(BLAST)

001: MIKKASFIVL RFQNFTENRS VEFLLSLRLS MAARLLALRR ALSLFSNQQH RFPLSQVSTE QLSLSNSLFS RSHVYGRLFQ RQLSVIREAN EASVTNVCNS
101: SNSATESAKV PSPATPSEEM MVKYKSQLKI NPRHDFMMVF TCKVCDTRSM KMASRESYEN GVVVVRCGGC DNLHLIADRR GWFGEPGSVE DFLASQGEEF
201: KKGSMDSLNL TPEDLAGGKI STE

Arabidopsis Description

Zim17-type zinc finger protein [Source:UniProtKB/TrEMBL;Acc:F4JE34]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.