Factsheet for Bra003197.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
golgi 1
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002423.1-P
Bra003525.1-P
Bra006027.1-P
Bra007745.1-P
Bra007747.1-P
Bra010620.1-P
Bra011794.1-P
Bra012532.1-P
Bra013423.1-P
Bra020203.1-P
Bra025315.1-P
Bra028628.1-P
Bra029188.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54826.1	Bra025315.1-P	AT3G27960.1	21798944
AT3G54826.1	Bra003525.1-P	AT3G63460.1	21798944
AT3G54826.1	Bra007745.1-P	AT3G63460.1	21798944
AT3G54826.1	Bra007747.1-P	AT3G63460.1	21798944
AT3G54826.1	Bra012532.1-P	AT4G19700.1	21798944
AT3G54826.1	Bra013423.1-P	AT4G19700.1	21798944
AT3G54826.1	Bra010620.1-P	AT4G37910.1	22841711
AT3G54826.1	Bra011794.1-P	AT4G37910.1	22841711
AT3G54826.1	Bra006027.1-P	AT5G09590.1	22841711
AT3G54826.1	Bra028628.1-P	AT5G09590.1	22841711
AT3G54826.1	Bra002423.1-P	AT5G22630.1	21798944
AT3G54826.1	Bra020203.1-P	AT5G22630.1	21798944
AT3G54826.1	Bra029188.1-P	AT5G51110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67612	Canola	mitochondrion	96.81	96.3
CDY07518	Canola	mitochondrion	95.74	95.24
Bra007101.1-P	Field mustard	mitochondrion	85.11	81.63
AT3G54826.1	Thale cress	mitochondrion, plastid	63.3	53.36
Os02t0819700-01	Rice	mitochondrion	45.21	45.21
GSMUA_Achr4P04340_001	Banana	mitochondrion	44.68	44.68
Zm00001d018501_P001	Maize	mitochondrion	43.62	43.85
KRH34848	Soybean	mitochondrion	43.62	43.62
TraesCS6B01G435000.1	Wheat	mitochondrion	43.62	42.49
KRG91929	Soybean	mitochondrion	41.49	41.27
VIT_13s0019g04580.t01	Wine grape	mitochondrion	41.49	40.62
TraesCS6D01G380400.1	Wheat	mitochondrion	43.09	40.5
Solyc05g053250.2.1	Tomato	mitochondrion	40.96	37.93
PGSC0003DMT400069831	Potato	mitochondrion	39.89	36.95
HORVU6Hr1G091500.1	Barley	mitochondrion	43.62	34.6
TraesCS6A01G395100.1	Wheat	plastid	43.62	34.02
EES07768	Sorghum	mitochondrion	43.09	33.75

Protein Annotations

EnsemblPlants:Bra003197.1	EnsemblPlants:Bra003197.1-P	EnsemblPlantsGene:Bra003197	GO:GO:0003674	GO:GO:0005488	GO:GO:0008270
GO:GO:0046872	InterPro:IPR007853	InterPro:Mt_import_TIM15	InterPro:Znf_DNL-typ	PANTHER:PTHR20922	PANTHER:PTHR20922:SF13
PFAM:PF05180	PFscan:PS51501	UniParc:UPI0002541442	UniProt:M4CG64	MapMan:35.2	:

Description

AT3G54826 (E=5e-070) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, Zim17-type (InterPro:IPR007853); Has 284 Blast hits to 284 proteins in 134 species: Archae - 0; Bacteria - 0; Metazoa - 100; Fungi - 79; Plants - 58; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).

Coordinates

chrA07:+:11818403..11819201

Molecular Weight (calculated)

20840.9 Da

IEP (calculated)

8.111

GRAVY (calculated)

-0.335

Length

188 amino acids

Sequence
(BLAST)

001: MAARFLSLKR ALSVYLTNQQ PRVPLFQGKL AQSKSLLSRD YAYGGLLQRH FSETAATNGC CNSSNSAVEL SKAPYTSPAT ASEELIVKYK SQLKINPRHD
101: FMMVFTCKVC ETRSMKMASR ESYEKGVVVV RCEGCDNLHL IADRRGWFGE PGSVEEFLAA QGEEFKKGSM DSLSLTVEDL AGEKMSSE

Best Arabidopsis Sequence Match ( AT3G54826.1 )
(BLAST)

001: MIKKASFIVL RFQNFTENRS VEFLLSLRLS MAARLLALRR ALSLFSNQQH RFPLSQVSTE QLSLSNSLFS RSHVYGRLFQ RQLSVIREAN EASVTNVCNS
101: SNSATESAKV PSPATPSEEM MVKYKSQLKI NPRHDFMMVF TCKVCDTRSM KMASRESYEN GVVVVRCGGC DNLHLIADRR GWFGEPGSVE DFLASQGEEF
201: KKGSMDSLNL TPEDLAGGKI STE

Arabidopsis Description

Zim17-type zinc finger protein [Source:UniProtKB/TrEMBL;Acc:F4JE34]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.