CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91098
EER91365
EER93165
EER96348
EES05647
EES07137
EES10725
EES12451
KXG36842

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54826.1	EES05647	AT3G27960.1	21798944
AT3G54826.1	KXG36842	AT3G63460.1	21798944
AT3G54826.1	EER91098	AT4G19700.1	21798944
AT3G54826.1	EER91365	AT5G09590.1	22841711
AT3G54826.1	EES07137	AT5G10810.1	21798944
AT3G54826.1	EES12451	AT5G10810.1	21798944
AT3G54826.1	EER96348	AT5G22630.1	21798944
AT3G54826.1	EES10725	AT5G22630.1	21798944
AT3G54826.1	EER93165	AT5G51110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018501_P001	Maize	mitochondrion	60.83	78.07
Os02t0819700-01	Rice	mitochondrion	51.67	65.96
TraesCS6B01G435000.1	Wheat	mitochondrion	48.75	60.62
TraesCS6D01G380400.1	Wheat	mitochondrion	47.92	57.5
HORVU6Hr1G091500.1	Barley	mitochondrion	49.58	50.21
TraesCS6A01G395100.1	Wheat	plastid	48.75	48.55
GSMUA_Achr4P04340_001	Banana	mitochondrion	36.25	46.28
VIT_13s0019g04580.t01	Wine grape	mitochondrion	35.42	44.27
KRG91929	Soybean	mitochondrion	34.17	43.39
CDY07518	Canola	mitochondrion	34.17	43.39
CDX67612	Canola	mitochondrion	34.17	43.39
KRH34848	Soybean	mitochondrion	33.75	43.09
Bra003197.1-P	Field mustard	mitochondrion	33.75	43.09
Bra007101.1-P	Field mustard	mitochondrion	33.75	41.33
AT3G54826.1	Thale cress	mitochondrion, plastid	36.67	39.46
PGSC0003DMT400069831	Potato	mitochondrion	32.92	38.92
Solyc05g053250.2.1	Tomato	mitochondrion	32.92	38.92
CDX73445	Canola	plastid	35.83	37.23
CDX78266	Canola	plastid	35.42	36.8

Protein Annotations

MapMan:35.2	EntrezGene:8057550	UniProt:C5XVZ0	EnsemblPlants:EES07768	ProteinID:EES07768	ProteinID:EES07768.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006457	GO:GO:0006810	GO:GO:0008150	GO:GO:0008270
GO:GO:0009987	GO:GO:0016043	GO:GO:0030150	GO:GO:0046872	GO:GO:0050821	GO:GO:0051087
InterPro:IPR007853	ProteinID:KXG31427.2	InterPro:Mt_import_TIM15	PFAM:PF05180	PFscan:PS51501	PANTHER:PTHR20922
PANTHER:PTHR20922:SF13	EnsemblPlantsGene:SORBI_3004G348100	unigene:Sbi.9461	UniParc:UPI0001A860EE	RefSeq:XP_002454792.1	InterPro:Znf_DNL-typ
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:67731503..67739601

Molecular Weight (calculated)

25588.1 Da

IEP (calculated)

7.868

GRAVY (calculated)

-0.442

Length

240 amino acids

Sequence
(BLAST)

001: MARFFLRWAL AARSLPAPSF QPSSRAEHMS KLPSLVCKIK GARTLVSYFP PVPGQQGAEQ QATPSSAQGQ QNAQAPTPQS QGFSFAPPAT AGLRSLLTVT
101: GASNTATDPQ DQQDSETTPP PASVPTPESG FKVRDTSNLK ISPRHDLAMI FTCKVCETRS MKMASKDSYQ NGVVVVRCGG CNNLHLIADR LGWFGEPGSI
201: EDFLASQGEE VKKGSTDTLN FTLDDLAGSQ ISSKGPSEQN

Best Arabidopsis Sequence Match ( AT3G54826.1 )
(BLAST)

001: MIKKASFIVL RFQNFTENRS VEFLLSLRLS MAARLLALRR ALSLFSNQQH RFPLSQVSTE QLSLSNSLFS RSHVYGRLFQ RQLSVIREAN EASVTNVCNS
101: SNSATESAKV PSPATPSEEM MVKYKSQLKI NPRHDFMMVF TCKVCDTRSM KMASRESYEN GVVVVRCGGC DNLHLIADRR GWFGEPGSVE DFLASQGEEF
201: KKGSMDSLNL TPEDLAGGKI STE

Arabidopsis Description

Zim17-type zinc finger protein [Source:UniProtKB/TrEMBL;Acc:F4JE34]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.