CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67919
CDX69342
CDX71689
CDX75683
CDX76700
CDX79419
CDX81132
CDX85810
CDX86457
CDX90397
CDX92343
CDX93907
CDX94520
CDX97062
CDY01615
CDY07541
CDY09152
CDY09318
CDY11476
CDY21311
CDY26946
CDY32642
CDY38850
CDY40120
CDY44807
CDY49682
CDY51918
CDY56552
CDY58518
CDY59281
CDY71607

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54826.1	CDX86457	AT3G27960.1	21798944
AT3G54826.1	CDY58518	AT3G27960.1	21798944
AT3G54826.1	CDX67919	AT3G63460.1	21798944
AT3G54826.1	CDX76700	AT3G63460.1	21798944
AT3G54826.1	CDX79419	AT3G63460.1	21798944
AT3G54826.1	CDX93907	AT3G63460.1	21798944
AT3G54826.1	CDY11476	AT3G63460.1	21798944
AT3G54826.1	CDX94520	AT4G19700.1	21798944
AT3G54826.1	CDY01615	AT4G19700.1	21798944
AT3G54826.1	CDY07541	AT4G19700.1	21798944
AT3G54826.1	CDY09318	AT4G19700.1	21798944
AT3G54826.1	CDY21311	AT4G19700.1	21798944
AT3G54826.1	CDY51918	AT4G19700.1	21798944
AT3G54826.1	CDY71607	AT4G19700.1	21798944
AT3G54826.1	CDX69342	AT4G37910.1	22841711
AT3G54826.1	CDX75683	AT4G37910.1	22841711
AT3G54826.1	CDX90397	AT4G37910.1	22841711
AT3G54826.1	CDY49682	AT4G37910.1	22841711
AT3G54826.1	CDX81132	AT5G09590.1	22841711
AT3G54826.1	CDX85810	AT5G09590.1	22841711
AT3G54826.1	CDY44807	AT5G09590.1	22841711
AT3G54826.1	CDY56552	AT5G09590.1	22841711
AT3G54826.1	CDX97062	AT5G10810.1	21798944
AT3G54826.1	CDY40120	AT5G10810.1	21798944
AT3G54826.1	CDX92343	AT5G22630.1	21798944
AT3G54826.1	CDY09152	AT5G22630.1	21798944
AT3G54826.1	CDY26946	AT5G22630.1	21798944
AT3G54826.1	CDY59281	AT5G22630.1	21798944
AT3G54826.1	CDX71689	AT5G51110.1	21798944
AT3G54826.1	CDY32642	AT5G51110.1	21798944
AT3G54826.1	CDY38850	AT5G51110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07518	Canola	mitochondrion	98.94	98.94
Bra003197.1-P	Field mustard	mitochondrion	96.3	96.81
CDX73445	Canola	plastid	86.77	71.0
CDX78266	Canola	plastid	86.24	70.56
AT3G54826.1	Thale cress	mitochondrion, plastid	63.49	53.81
Os02t0819700-01	Rice	mitochondrion	44.97	45.21
Zm00001d018501_P001	Maize	mitochondrion	42.86	43.32
KRH34848	Soybean	mitochondrion	42.86	43.09
GSMUA_Achr4P04340_001	Banana	mitochondrion	42.86	43.09
TraesCS6B01G435000.1	Wheat	mitochondrion	43.39	42.49
KRG91929	Soybean	mitochondrion	41.8	41.8
VIT_13s0019g04580.t01	Wine grape	mitochondrion	41.27	40.62
TraesCS6D01G380400.1	Wheat	mitochondrion	42.86	40.5
Solyc05g053250.2.1	Tomato	mitochondrion	40.21	37.44
PGSC0003DMT400069831	Potato	mitochondrion	39.15	36.45
HORVU6Hr1G091500.1	Barley	mitochondrion	43.39	34.6
EES07768	Sorghum	mitochondrion	43.39	34.17
TraesCS6A01G395100.1	Wheat	plastid	43.39	34.02

Protein Annotations

EnsemblPlants:CDX67612	EnsemblPlantsGene:GSBRNA2T00098760001	GO:A0A078BTT9	GO:GO:0003674	GO:GO:0005488	GO:GO:0008270
InterPro:IPR007853	InterPro:Mt_import_TIM15	InterPro:Znf_DNL-typ	PANTHER:PTHR20922	PANTHER:PTHR20922:SF13	PFAM:PF05180
PFscan:PS51501	ProteinID:CDX67612	ProteinID:CDX67612.1	UniParc:UPI0004EE11E5	MapMan:35.2	:

Description

BnaA07g16520D

Coordinates

chrLK031787:+:1250468..1251266

Molecular Weight (calculated)

20926.0 Da

IEP (calculated)

8.112

GRAVY (calculated)

-0.339

Length

189 amino acids

Sequence
(BLAST)

001: MAARFLSLRR ALSVYLTNQQ PRVPLFQAGK LAQSKSLLSR DYAYGGLLQR HFSETAATNG CCNSSNSAAE LTKAPYTSPA TASEELIVKY KSQLKINPRH
101: DFMMVFTCKV CETRSMKMAS RESYEKGVVV VRCEGCDNLH LIADRRGWFG EPGSVEEFLA AQGEEFKKGS MDSLSLTVED LAGEKMSSE

Best Arabidopsis Sequence Match ( AT3G54826.1 )
(BLAST)

001: MIKKASFIVL RFQNFTENRS VEFLLSLRLS MAARLLALRR ALSLFSNQQH RFPLSQVSTE QLSLSNSLFS RSHVYGRLFQ RQLSVIREAN EASVTNVCNS
101: SNSATESAKV PSPATPSEEM MVKYKSQLKI NPRHDFMMVF TCKVCDTRSM KMASRESYEN GVVVVRCGGC DNLHLIADRR GWFGEPGSVE DFLASQGEEF
201: KKGSMDSLNL TPEDLAGGKI STE

Arabidopsis Description

Zim17-type zinc finger protein [Source:UniProtKB/TrEMBL;Acc:F4JE34]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.