CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90397	Canola	mitochondrion	99.27	99.7
CDX69342	Canola	mitochondrion	95.15	95.29
CDX75683	Canola	mitochondrion	94.71	94.57
AT4G37910.1	Thale cress	mitochondrion	93.54	93.4
CDY56552	Canola	mitochondrion	81.2	81.2
CDX81132	Canola	mitochondrion	80.91	80.91
CDX85810	Canola	mitochondrion	80.76	80.88
CDY44807	Canola	mitochondrion	79.3	68.35
CDY11007	Canola	cytosol	49.49	54.18
CDY08914	Canola	cytosol	49.19	53.95
CDY34275	Canola	cytosol	49.49	53.92
CDY24832	Canola	cytosol	49.19	53.6
CDX92631	Canola	plastid	52.28	50.28
CDY03462	Canola	plastid	52.42	50.14
CDX67525	Canola	endoplasmic reticulum	41.7	49.22
CDY22648	Canola	cytosol	42.88	48.26
CDY03461	Canola	plastid	50.37	48.24
CDY00784	Canola	cytosol	45.67	47.85
CDY13371	Canola	cytosol, endoplasmic reticulum	47.28	47.85
CDY52661	Canola	cytosol	45.37	47.76
CDX73815	Canola	cytosol	45.67	47.7
CDY63497	Canola	endoplasmic reticulum	44.93	47.66
CDY50531	Canola	cytosol	45.37	47.54
CDX79726	Canola	endoplasmic reticulum	44.64	47.35
CDX77423	Canola	cytosol, endoplasmic reticulum	44.64	47.35
CDY33359	Canola	cytosol	35.98	47.3
CDY35063	Canola	cytosol	35.83	47.1
CDY46766	Canola	endoplasmic reticulum	44.35	47.04
CDY23972	Canola	endoplasmic reticulum	44.2	46.88
CDX84809	Canola	endoplasmic reticulum	44.2	46.88
CDX96825	Canola	cytosol	43.61	45.69
CDX83960	Canola	cytosol	43.61	45.69
CDY06347	Canola	endoplasmic reticulum	43.02	45.64
CDY03459	Canola	cytosol	43.91	45.17
CDY40362	Canola	cytosol, mitochondrion	27.75	41.63
CDY49668	Canola	cytosol	30.4	41.57
CDY49667	Canola	nucleus	1.62	14.67

Protein Annotations

Gene3D:1.20.1270.10	MapMan:19.1.3.1	Gene3D:2.60.34.10	Gene3D:3.30.420.40	Gene3D:3.90.640.10	MapMan:7.11.2.2.5
GO:A0A078IIB3	UniProt:A0A078IIB3	EnsemblPlants:CDY49682	ProteinID:CDY49682	ProteinID:CDY49682.1	InterPro:Chaperone_DnaK
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	EnsemblPlantsGene:GSBRNA2T00093573001	InterPro:HSP70_C_sf
InterPro:HSP70_peptide-bd_sf	InterPro:Heat_shock_70_CS	InterPro:Hsp_70_fam	InterPro:IPR029047	InterPro:IPR029048	HAMAP:MF_00332
PFAM:PF00012	PRINTS:PR00301	ScanProsite:PS00297	ScanProsite:PS00329	ScanProsite:PS01036	PANTHER:PTHR19375
PANTHER:PTHR19375:SF333	SUPFAM:SSF100920	SUPFAM:SSF53067	TIGRFAMs:TIGR02350	UniParc:UPI0004EC9E5B	SEG:seg

Description

BnaC03g61170DBnaC03g61170D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IIB3]

Coordinates

chrLK032852:-:105793..108606

Molecular Weight (calculated)

72963.1 Da

IEP (calculated)

5.940

GRAVY (calculated)

-0.285

Length

681 amino acids

Sequence
(BLAST)

001: MASVALLRAL RRRELHTASV SAFKSVSTNG KTSLIGKLGH FARPFCSRPV GNDVIGIDLG TTNSCVAVME GKTPRVIENA EGTRTTPSVV AINQKGELLV
101: GTPAKRQAVT NPTNTIFGSK RLIGRRFDDS QTQKEMKMVP YKIVKAPNGD AWVEANGQKF SPSQIGANVL TKMKETAEAY LGKSITKAVV TVPAYFNDAQ
201: RQATKDAGKI AGLDVQRIIN EPTAAALSYG MNNKEGVIAV FDLGGGTFDV SILEISSGVF EVKATNGDTF LGGEDFDNTL LEYLVSEFKR SDNIDLTKDK
301: LALQRLREAA EKAKIELSST SQTEINLPFI TADASGAKHL NITLTRSKFE ALVGKLIERT RCPCQNCLKD AGVTVKEVDE VLLVGGMTRV PKVQEIVAEI
401: FGKSPCKGVN PDEAVAMGAA IQGGILRGDV KELLLLDVTP LSLGIETLGG IFTRLINRNT TIPTKKSQVF STAADNQMQV GIKVLQGERE MAADNKSLGE
501: FDLVGIPPAP RGMPQIEVTF DIDANGIVTV SAKDKATGKE QQITIRSSGG LSDDEINRMV KEAELNSHKD QEKKQLIDLR NTADTTIYSV EKSLSEYREK
601: IPAEIASEIE TAVSDLRTAM AGEEIEDIKA KLEAANKAVS KIGEHMSKGS GSSGSSGGEG SSGTDQQTPE AEFEEASGSK K

Best Arabidopsis Sequence Match ( AT4G37910.2 )
(BLAST)

001: MASVALLRSF RRREVQMASV SAFKSVSANG KNSMFGKLGY LARPFCSRPV GNDVIGIDLG TTNSCVSVME GKTARVIENA EGSRTTPSVV AMNQKGELLV
101: GTPAKRQAVT NPTNTIFGSK RLIGRRFDDP QTQKEMKMVP YKIVKAPNGD AWVEANGQKF SPSQIGANVL TKMKETAEAY LGKSINKAVV TVPAYFNDAQ
201: RQATKDAGKI AGLDVQRIIN EPTAAALSYG MNNKEGVIAV FDLGGGTFDV SILEISSGVF EVKATNGDTF LGGEDFDNTL LEYLVNEFKR SDNIDLTKDN
301: LALQRLREAA EKAKIELSST TQTEINLPFI TADASGAKHL NITLTRSKFE GLVGKLIERT RSPCQNCLKD AGVTIKEVDE VLLVGGMTRV PKVQEIVSEI
401: FGKSPCKGVN PDEAVAMGAA IQGGILRGDV KDLLLLDVVP LSLGIETLGA VFTKLIPRNT TIPTKKSQVF STAADNQMQV GIKVLQGERE MAADNKVLGE
501: FDLVGIPPAP RGMPQIEVTF DIDANGITTV SAKDKATGKE QNITIRSSGG LSDDEINRMV KEAELNAQKD QEKKQLIDLR NSADTTIYSV EKSLSEYREK
601: IPAEIASEIE TAVSDLRTAM AGEDVEDIKA KVEAANKAVS KIGEHMSKGS GSSGSDGSSG EGTSGTEQTP EAEFEEASGS RK

Arabidopsis Description

HSP70-9Heat shock 70 kDa protein 9, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8GUM2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.