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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol
BaCelLo:cytosol
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX78797
CDX86798
CDX90794
CDY05137
CDY13243
CDY60785
CDY63435

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G12580.1 CDX86798 AT4G11260.1 18065690
AT3G12580.1 CDX90794 AT4G11260.1 18065690
AT3G12580.1 CDY05137 AT4G11260.1 18065690
AT3G12580.1 CDY13243 AT4G11260.1 18065690
AT3G12580.1 CDY63435 AT4G11260.1 18065690
AT3G12580.1 CDX78797 AT4G17750.1 11807141
AT3G12580.1 CDY60785 AT4G17750.1 11807141
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY00784 Canola cytosol 99.39 99.69
Bra001457.1-P Field mustard cytosol 89.88 99.66
CDY52661 Canola cytosol 98.01 98.76
CDY50531 Canola cytosol 98.31 98.62
AT3G12580.1 Thale cress cytosol 96.78 97.08
EES19649 Sorghum cytosol 94.79 95.22
Os01t0840100-01 Rice nucleus, plasma membrane, plastid 94.17 94.75
HORVU1Hr1G072220.4 Barley cytosol 85.43 94.57
Os05t0460000-01 Rice cytosol, nucleus, plastid 93.56 94.43
KRH01631 Soybean endoplasmic reticulum 93.86 94.3
KRH70484 Soybean cytosol 80.83 94.11
TraesCS1B01G294300.1 Wheat cytosol, golgi, unclear 92.94 93.52
Zm00001d010529_P001 Maize cytosol 92.94 93.37
TraesCS1D01G284000.2 Wheat cytosol, golgi 92.79 93.36
KXG26133 Sorghum cytosol 88.19 93.34
TraesCS1A01G285000.2 Wheat cytosol, golgi 92.64 93.21
EES01731 Sorghum cytosol 92.33 92.9
Zm00001d042922_P002 Maize cytosol 92.33 92.9
TraesCS3D01G351900.1 Wheat cytosol 92.79 92.79
TraesCS3D01G352400.2 Wheat cytosol, golgi 92.02 92.74
Os03t0276500-01 Rice plasma membrane 92.33 92.62
TraesCS3B01G390700.1 Wheat cytosol 92.48 92.48
Zm00001d012420_P001 Maize plasma membrane 91.87 92.44
TraesCS3B01G390800.1 Wheat cytosol 87.73 92.26
HORVU4Hr1G059390.1 Barley cytosol 91.72 91.86
TraesCS4B01G206700.1 Wheat cytosol 91.56 91.71
TraesCS4D01G207500.1 Wheat cytosol 91.56 91.71
EER95095 Sorghum cytosol 90.95 91.37
TraesCS4A01G097900.2 Wheat cytosol 91.41 90.99
Zm00001d028630_P005 Maize cytosol, extracellular, nucleus, plasma membrane, plastid 90.34 90.75
HORVU3Hr1G086500.3 Barley cytosol, plastid 93.25 86.24
CDY40362 Canola cytosol, mitochondrion 59.2 85.02
CDY33359 Canola cytosol 66.26 83.4
CDX83960 Canola cytosol 83.13 83.38
CDY35063 Canola cytosol 66.1 83.2
CDX96825 Canola cytosol 82.36 82.62
CDY49668 Canola cytosol 62.88 82.33
CDX67525 Canola endoplasmic reticulum 55.06 62.22
CDY63497 Canola endoplasmic reticulum 60.58 61.53
CDX77423 Canola cytosol, endoplasmic reticulum 60.58 61.53
CDX84809 Canola endoplasmic reticulum 60.28 61.22
CDX79726 Canola endoplasmic reticulum 60.28 61.22
CDY46766 Canola endoplasmic reticulum 60.28 61.22
CDY23972 Canola endoplasmic reticulum 60.28 61.22
CDY22648 Canola cytosol 56.75 61.16
CDY13371 Canola cytosol, endoplasmic reticulum 62.88 60.92
CDY06347 Canola endoplasmic reticulum 56.75 57.63
CDY34275 Canola cytosol 44.63 46.56
CDY24832 Canola cytosol 44.63 46.56
CDY08914 Canola cytosol 44.33 46.54
CDX85810 Canola mitochondrion 48.47 46.47
CDY11007 Canola cytosol 44.17 46.3
CDX81132 Canola mitochondrion 48.31 46.26
CDY56552 Canola mitochondrion 48.31 46.26
CDX90397 Canola mitochondrion 47.7 45.87
CDY49682 Canola mitochondrion 47.7 45.67
CDX69342 Canola mitochondrion 46.63 44.71
CDX75683 Canola mitochondrion 46.63 44.57
CDX92631 Canola plastid 45.86 42.23
CDY03462 Canola plastid 46.01 42.13
CDY03461 Canola plastid 44.17 40.51
CDY44807 Canola mitochondrion 47.39 39.11
CDY03459 Canola cytosol 38.8 38.22
CDY49667 Canola nucleus 2.61 22.67
Protein Annotations
Gene3D:1.20.1270.10MapMan:19.1.5.1Gene3D:2.60.34.10Gene3D:3.30.30.30Gene3D:3.30.420.40Gene3D:3.90.640.10
GO:A0A078CAJ5EnsemblPlants:CDX73815ProteinID:CDX73815ProteinID:CDX73815.1ncoils:CoilGO:GO:0000166
GO:GO:0003674GO:GO:0005488GO:GO:0005524EnsemblPlantsGene:GSBRNA2T00111511001InterPro:HSP70_C_sfInterPro:HSP70_peptide-bd_sf
InterPro:Heat_shock_70_CSInterPro:Hsp_70_famInterPro:IPR029047InterPro:IPR029048PFAM:PF00012PRINTS:PR00301
ScanProsite:PS00297ScanProsite:PS00329ScanProsite:PS01036PANTHER:PTHR19375PANTHER:PTHR19375:SF308SUPFAM:SSF100920
SUPFAM:SSF100934SUPFAM:SSF53067UniParc:UPI0004EEFEE6SEG:seg::
Description
BnaA03g32320D
Coordinates
chrLK031800:+:54950..57469
Molecular Weight (calculated)
71363.7 Da
IEP (calculated)
4.881
GRAVY (calculated)
-0.438
Length
652 amino acids
Sequence
(BLAST)
001: MAGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDS ERLIGDAAKN QVAMNPTNTV FDAKRLIGRR FSDPSVQADM RHWPFKVISG
101: PAEKPMISVN YKGEEKQFSA EEISSMVLTK MREIAEAYLG TSIKNAVVTV PAYFNDSQRQ ATKDAGVISG LNVMRIINEP TAAAIAYGLD KKASSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKHKKDIT GNPRALRRLR TACERAKRTL SSTAQTTIEI DSLYEGIDFY
301: TTITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSNVHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTVLI PRNTTIPTKK EQIFSTYSDN QPGVLIQVYE GERARTKDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKEE IEKMVQEAEK YKAEDEEHKK KVDAKNALEN YAYNMRNTIK DEKIASKLEA ADKKKIEDAI DQAIEWLDGN QLAEADEFED
601: KMKELESVCN PIIARMYQGG AGGDMGGGAG GMDDDVPAGG SGGAGPKIEE VD
Best Arabidopsis Sequence Match ( AT3G12580.1 )
(BLAST)
001: MAGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDS ERLIGDAAKN QVAMNPTNTV FDAKRLIGRR YSDPSVQADK SHWPFKVVSG
101: PGEKPMIVVN HKGEEKQFSA EEISSMVLIK MREIAEAFLG SPVKNAVVTV PAYFNDSQRQ ATKDAGVISG LNVMRIINEP TAAAIAYGLD KKASSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKNKKDIT GNPRALRRLR TACERAKRTL SSTAQTTIEI DSLFEGIDFY
301: TTITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSSVHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTVLI PRNTTIPTKK EQIFSTYSDN QPGVLIQVYE GERARTKDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKEE IEKMVQEAEK YKAEDEEHKK KVDAKNALEN YAYNMRNTIK DEKIASKLDA ADKKKIEDAI DQAIEWLDGN QLAEADEFED
601: KMKELESLCN PIIARMYQGA GPDMGGAGGM DDDTPAGGSG GAGPKIEEVD
Arabidopsis Description
MED37CProbable mediator of RNA polymerase II transcription subunit 37c [Source:UniProtKB/Swiss-Prot;Acc:Q9LHA8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.