Subcellular Localization
min:
: max
Winner_takes_all: golgi, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
golgi:
25769308
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS1D01G284000.2 | Wheat | cytosol, golgi | 99.85 | 99.85 |
TraesCS1B01G294300.1 | Wheat | cytosol, golgi, unclear | 99.69 | 99.69 |
HORVU1Hr1G072220.4 | Barley | cytosol | 89.51 | 98.47 |
Os05t0460000-01 | Rice | cytosol, nucleus, plastid | 94.29 | 94.58 |
KRH70484 | Soybean | cytosol | 81.48 | 94.29 |
KRH01631 | Soybean | endoplasmic reticulum | 94.29 | 94.14 |
KXG26133 | Sorghum | cytosol | 89.35 | 93.99 |
CDY52661 | Canola | cytosol | 93.21 | 93.35 |
CDY50531 | Canola | cytosol | 93.52 | 93.23 |
EES01731 | Sorghum | cytosol | 93.21 | 93.21 |
Bra038734.1-P | Field mustard | cytosol | 93.36 | 93.08 |
Zm00001d042922_P002 | Maize | cytosol | 93.06 | 93.06 |
Bra001457.1-P | Field mustard | cytosol | 84.41 | 93.03 |
Zm00001d012420_P001 | Maize | plasma membrane | 92.9 | 92.9 |
CDX73815 | Canola | cytosol | 93.21 | 92.64 |
TraesCS4A01G175100.1 | Wheat | cytosol | 79.48 | 92.63 |
CDY00784 | Canola | cytosol | 92.9 | 92.62 |
AT3G12580.1 | Thale cress | cytosol | 92.75 | 92.46 |
TraesCS6A01G337100.4 | Wheat | cytosol | 91.36 | 91.5 |
TraesCS5A01G078000.1 | Wheat | cytosol, nucleus | 91.05 | 91.19 |
TraesCS5A01G479300.1 | Wheat | golgi | 90.74 | 90.74 |
TraesCS4A01G097900.2 | Wheat | cytosol | 91.05 | 90.08 |
TraesCS4A01G098600.1 | Wheat | cytosol | 90.43 | 87.59 |
TraesCS6A01G342200.1 | Wheat | cytosol, peroxisome, plastid | 59.1 | 71.72 |
TraesCS6A01G342500.1 | Wheat | cytosol | 59.1 | 70.53 |
TraesCS2A01G507000.2 | Wheat | cytosol | 51.39 | 68.66 |
TraesCS4A01G098100.1 | Wheat | cytosol | 61.73 | 68.03 |
TraesCS4A01G098200.1 | Wheat | cytosol | 57.1 | 67.89 |
TraesCS6A01G342900.1 | Wheat | cytosol | 49.38 | 65.57 |
TraesCS2A01G506900.1 | Wheat | golgi, plastid, unclear | 50.77 | 63.64 |
TraesCS6A01G042600.1 | Wheat | golgi | 62.96 | 61.35 |
TraesCS5A01G298700.1 | Wheat | endoplasmic reticulum | 60.34 | 59.24 |
TraesCS7A01G430600.1 | Wheat | endoplasmic reticulum | 59.57 | 58.66 |
TraesCS2A01G585600.1 | Wheat | endoplasmic reticulum | 57.72 | 56.07 |
TraesCS3A01G262900.1 | Wheat | peroxisome | 50.15 | 52.67 |
TraesCS1A01G295600.1 | Wheat | mitochondrion | 47.07 | 44.66 |
TraesCS3A01G305100.3 | Wheat | mitochondrion | 47.07 | 44.59 |
TraesCS1A01G133100.2 | Wheat | golgi | 46.76 | 44.3 |
TraesCS5A01G268100.1 | Wheat | mitochondrion | 46.3 | 43.86 |
TraesCS5A01G106200.2 | Wheat | plastid | 45.68 | 42.9 |
Protein Annotations
Gene3D:1.20.1270.10 | MapMan:19.1.5.1 | Gene3D:2.60.34.10 | Gene3D:3.30.30.30 | Gene3D:3.30.420.40 | Gene3D:3.90.640.10 |
ncoils:Coil | InterPro:HSP70_C_sf | InterPro:HSP70_peptide-bd_sf | InterPro:Heat_shock_70_CS | InterPro:Hsp_70_fam | InterPro:IPR029047 |
InterPro:IPR029048 | PFAM:PF00012 | PRINTS:PR00301 | ScanProsite:PS00297 | ScanProsite:PS00329 | ScanProsite:PS01036 |
PANTHER:PTHR19375 | PANTHER:PTHR19375:SF323 | SUPFAM:SSF100920 | SUPFAM:SSF100934 | SUPFAM:SSF53067 | EnsemblPlantsGene:TraesCS1A01G285000 |
EnsemblPlants:TraesCS1A01G285000.2 | TIGR:cd10233 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr1A:-:482335991..482338978
Molecular Weight (calculated)
71048.6 Da
IEP (calculated)
4.876
GRAVY (calculated)
-0.415
Length
648 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKGEGPAIG IDLGTTYSCV GVWQHDRVEI IANDQGNRTT PSYVAFTDTE RLIGDAAKNQ VAMNPTNTVF DAKRLIGRRF SDPSVQSDMK LWPFKVIPGP
101: ADKPMIVVNY KGEEKQFAAE EISSMVLIKM REIAEAFLGN SVKNAVVTVP AYFNDSQRQA TKDAGAIAGL NVLRIINEPT AAAIAYGLDK KATSTGEKNV
201: LIFDLGGGTF DVSLLTIEEG IFEVKATAGD THLGGEDFDN RMVNHFVQEF KRKHKKDITG NPRALRRLRT ACERAKRTLS STAQTTIEID SLYEGVDFYT
301: TITRARFEEL NMDLFRKCME PVEKCLRDAK MDKSTVHDVV LVGGSTRIPK VQQLLQDFFN GKELCKSINP DEAVAYGASV QAAILSGEGN EKVQDLLLLD
401: VTPLSLGLET AGGVMTTLIP RNTTIPTKKE QVFSTYSDNQ PGVLIQVYEG ERARTKDNNL LGKFELSGIP PAPRGVPQIT VCFDIDANGI LNVSAEDKTT
501: GQKNKITITN DKGRLSKEEI EKMVQEAERY KAEDEEHKKK VDAKNALENY AYNMRNTVKD DKIASKLGAD DKKKVEEAIE GTISWLDANQ LAEADEFEDK
601: MKELEGICNP IIAKMYQGAA PDMGGGMGMD EDMPAGAGGA GPKIEEVD
101: ADKPMIVVNY KGEEKQFAAE EISSMVLIKM REIAEAFLGN SVKNAVVTVP AYFNDSQRQA TKDAGAIAGL NVLRIINEPT AAAIAYGLDK KATSTGEKNV
201: LIFDLGGGTF DVSLLTIEEG IFEVKATAGD THLGGEDFDN RMVNHFVQEF KRKHKKDITG NPRALRRLRT ACERAKRTLS STAQTTIEID SLYEGVDFYT
301: TITRARFEEL NMDLFRKCME PVEKCLRDAK MDKSTVHDVV LVGGSTRIPK VQQLLQDFFN GKELCKSINP DEAVAYGASV QAAILSGEGN EKVQDLLLLD
401: VTPLSLGLET AGGVMTTLIP RNTTIPTKKE QVFSTYSDNQ PGVLIQVYEG ERARTKDNNL LGKFELSGIP PAPRGVPQIT VCFDIDANGI LNVSAEDKTT
501: GQKNKITITN DKGRLSKEEI EKMVQEAERY KAEDEEHKKK VDAKNALENY AYNMRNTVKD DKIASKLGAD DKKKVEEAIE GTISWLDANQ LAEADEFEDK
601: MKELEGICNP IIAKMYQGAA PDMGGGMGMD EDMPAGAGGA GPKIEEVD
001: MAGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDS ERLIGDAAKN QVAMNPTNTV FDAKRLIGRR YSDPSVQADK SHWPFKVVSG
101: PGEKPMIVVN HKGEEKQFSA EEISSMVLIK MREIAEAFLG SPVKNAVVTV PAYFNDSQRQ ATKDAGVISG LNVMRIINEP TAAAIAYGLD KKASSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKNKKDIT GNPRALRRLR TACERAKRTL SSTAQTTIEI DSLFEGIDFY
301: TTITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSSVHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTVLI PRNTTIPTKK EQIFSTYSDN QPGVLIQVYE GERARTKDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKEE IEKMVQEAEK YKAEDEEHKK KVDAKNALEN YAYNMRNTIK DEKIASKLDA ADKKKIEDAI DQAIEWLDGN QLAEADEFED
601: KMKELESLCN PIIARMYQGA GPDMGGAGGM DDDTPAGGSG GAGPKIEEVD
101: PGEKPMIVVN HKGEEKQFSA EEISSMVLIK MREIAEAFLG SPVKNAVVTV PAYFNDSQRQ ATKDAGVISG LNVMRIINEP TAAAIAYGLD KKASSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKNKKDIT GNPRALRRLR TACERAKRTL SSTAQTTIEI DSLFEGIDFY
301: TTITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSSVHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTVLI PRNTTIPTKK EQIFSTYSDN QPGVLIQVYE GERARTKDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKEE IEKMVQEAEK YKAEDEEHKK KVDAKNALEN YAYNMRNTIK DEKIASKLDA ADKKKIEDAI DQAIEWLDGN QLAEADEFED
601: KMKELESLCN PIIARMYQGA GPDMGGAGGM DDDTPAGGSG GAGPKIEEVD
Arabidopsis Description
MED37CProbable mediator of RNA polymerase II transcription subunit 37c [Source:UniProtKB/Swiss-Prot;Acc:Q9LHA8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.