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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:
  • cytosol 4
  • plastid 1
  • mitochondrion 2
  • endoplasmic reticulum 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plastid
Any Predictor:cytosol, endoplasmic reticulum, mitochondrion, plastid
BaCelLo:cytosol
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:endoplasmic reticulum, mitochondrion
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
nucleus: 18203134
plastid: 27992503
msms PMID: 18203134 doi
G Li, BR Nallamilli, F Tan, Z Peng
Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
PPI

Inferred distinct locusB in Crop

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os01t0840100-01 Rice nucleus, plasma membrane, plastid 97.37 97.07
EES19649 Sorghum cytosol 97.21 96.76
Zm00001d010529_P001 Maize cytosol 96.28 95.84
HORVU1Hr1G072220.4 Barley cytosol 86.69 95.08
TraesCS1B01G294300.1 Wheat cytosol, golgi, unclear 94.89 94.6
Os11t0703900-01 Rice extracellular, plasma membrane 94.89 94.45
TraesCS1D01G284000.2 Wheat cytosol, golgi 94.74 94.44
Bra001457.1-P Field mustard cytosol 85.91 94.39
TraesCS1A01G285000.2 Wheat cytosol, golgi 94.58 94.29
KRH70484 Soybean cytosol 81.58 94.11
TraesCS3D01G352400.2 Wheat cytosol, golgi 94.12 93.97
TraesCS3D01G351900.1 Wheat cytosol 94.74 93.86
TraesCS3B01G390700.1 Wheat cytosol 94.74 93.86
AT3G12580.1 Thale cress cytosol 94.43 93.85
CDY00784 Canola cytosol 94.27 93.69
KRH01631 Soybean endoplasmic reticulum 94.12 93.68
CDX73815 Canola cytosol 94.43 93.56
CDY52661 Canola cytosol 93.65 93.51
TraesCS3B01G390800.1 Wheat cytosol 89.63 93.39
Bra038734.1-P Field mustard cytosol 93.96 93.38
CDY50531 Canola cytosol 93.96 93.38
Os03t0276500-01 Rice plasma membrane 93.81 93.23
Os03t0821100-01 Rice plasma membrane 93.5 93.07
Os03t0277300-01 Rice plastid 91.33 90.35
HORVU3Hr1G086500.3 Barley cytosol, plastid 95.36 87.38
Os03t0276800-01 Rice cytosol 60.53 69.82
Os11t0187600-01 Rice cytosol 50.15 66.26
Os02t0115900-02 Rice plasma membrane 63.93 62.11
Os11t0187500-01 Rice cytosol, mitochondrion, plastid 52.32 58.58
Os03t0710500-00 Rice extracellular, plasma membrane 59.29 57.25
Os05t0428600-01 Rice extracellular, plasma membrane 60.06 56.48
Os05t0367800-00 Rice plasma membrane 55.11 53.21
Os08t0197700-00 Rice plasma membrane 59.29 50.13
Os05t0303000-01 Rice plastid 33.13 46.62
Os02t0774300-01 Rice mitochondrion 48.3 45.95
Os03t0113700-01 Rice mitochondrion 47.83 45.71
Os09t0491772-01 Rice mitochondrion 46.59 44.01
Os12t0244100-01 Rice plastid 46.75 43.27
Protein Annotations
Gene3D:1.20.1270.10MapMan:19.1.5.1Gene3D:2.60.34.10Gene3D:3.30.30.30Gene3D:3.30.420.40Gene3D:3.90.640.10
EntrezGene:4327388EntrezGene:4339012ProteinID:AAT39165.1EMBL:AK243004EMBL:AK243277ProteinID:BAB67894.1
ProteinID:BAB93214.1ProteinID:BAF06671.1ProteinID:BAF17668.1ProteinID:BAS75149.1ProteinID:BAS94400.1ncoils:Coil
ProteinID:EAZ14100.1ProteinID:EEE63984.1GO:GO:0000166GO:GO:0003674GO:GO:0005488GO:GO:0005524
EMBL:GQ848068EMBL:GU120335InterPro:HSP70_C_sfInterPro:HSP70_peptide-bd_sfInterPro:Heat_shock_70_CSInterPro:Hsp_70_fam
InterPro:IPR029047InterPro:IPR029048EnsemblPlantsGene:Os05g0460000EnsemblPlants:Os05t0460000-01PFAM:PF00012PRINTS:PR00301
ScanProsite:PS00297ScanProsite:PS00329ScanProsite:PS01036PANTHER:PTHR19375PANTHER:PTHR19375:SF323UniProt:Q6L509
SUPFAM:SSF100920SUPFAM:SSF100934SUPFAM:SSF53067UniParc:UPI0000378055RefSeq:XP_015618966.1RefSeq:XP_015640166.1
SEG:seg:::::
Description
CYTOSOLIC HEAT SHOCK PROTEIN 70-1Similar to 70 kDa heat shock cognate protein 1. (Os05t0460000-01)
Coordinates
chr5:-:22599462..22602556
Molecular Weight (calculated)
70839.3 Da
IEP (calculated)
4.836
GRAVY (calculated)
-0.420
Length
646 amino acids
Sequence
(BLAST)
001: MSKGEGPAIG IDLGTTYSCV GVWQHDRVEI IANDQGNRTT PSYVAFTDTE RLIGDAAKNQ VAMNPTNTVF DAKRLIGRRF SDPSVQSDMK LWPFKVVPGP
101: GDKPMIVVQY KGEEKQFAAE EISSMVLIKM REIAEAYLGS SIKNAVVTVP AYFNDSQRQA TKDAGVIAGL NVMRIINEPT AAAIAYGLDK KATSSGEKNV
201: LIFDLGGGTF DVSLLTIEEG IFEVKATAGD THLGGEDFDN RMVNHFVQEF KRKNKKDISG NPRALRRLRT ACERAKRTLS STAQTTIEID SLYEGIDFYT
301: TITRARFEEL NMDLFRKCME PVEKCLRDAK MDKSSVHDVV LVGGSTRIPK VQQLLQDFFN GKELCKSINP DEAVAYGAAV QAAILSGEGN EKVQDLLLLD
401: VTPLSLGLET AGGVMTVLIP RNTTIPTKKE QVFSTYSDNQ PGVLIQVYEG ERARTKDNNL LGKFELSGIP PAPRGVPQIN VCFDIDANGI LNVSAEDKTT
501: GQKNKITITN DKGRLSKEEI EKMVQEAEKY KAEDEEHKKK VDAKNALENY AYNMRNTIKD EKIASKLAAD DKKRIEDAID GAISWLDTNQ LAEADEFEDK
601: MKELEGICNP IIAKMYQGPG ADMAGGMDED APAGGSGAGP KIEEVD
Best Arabidopsis Sequence Match ( AT3G12580.1 )
(BLAST)
001: MAGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDS ERLIGDAAKN QVAMNPTNTV FDAKRLIGRR YSDPSVQADK SHWPFKVVSG
101: PGEKPMIVVN HKGEEKQFSA EEISSMVLIK MREIAEAFLG SPVKNAVVTV PAYFNDSQRQ ATKDAGVISG LNVMRIINEP TAAAIAYGLD KKASSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKNKKDIT GNPRALRRLR TACERAKRTL SSTAQTTIEI DSLFEGIDFY
301: TTITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSSVHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTVLI PRNTTIPTKK EQIFSTYSDN QPGVLIQVYE GERARTKDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKEE IEKMVQEAEK YKAEDEEHKK KVDAKNALEN YAYNMRNTIK DEKIASKLDA ADKKKIEDAI DQAIEWLDGN QLAEADEFED
601: KMKELESLCN PIIARMYQGA GPDMGGAGGM DDDTPAGGSG GAGPKIEEVD
Arabidopsis Description
MED37CProbable mediator of RNA polymerase II transcription subunit 37c [Source:UniProtKB/Swiss-Prot;Acc:Q9LHA8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.