Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- plastid 1
- mitochondrion 2
- endoplasmic reticulum 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
nucleus:
18203134
plastid: 27992503 |
msms PMID:
18203134
doi
Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Os01t0624500-01 | |
Os03t0854500-01 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT3G12580.1 | Os01t0624500-01 | AT4G11260.1 | 18065690 |
AT3G12580.1 | Os03t0854500-01 | AT4G17750.1 | 11807141 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Os01t0840100-01 | Rice | nucleus, plasma membrane, plastid | 97.37 | 97.07 |
EES19649 | Sorghum | cytosol | 97.21 | 96.76 |
Zm00001d010529_P001 | Maize | cytosol | 96.28 | 95.84 |
HORVU1Hr1G072220.4 | Barley | cytosol | 86.69 | 95.08 |
TraesCS1B01G294300.1 | Wheat | cytosol, golgi, unclear | 94.89 | 94.6 |
Os11t0703900-01 | Rice | extracellular, plasma membrane | 94.89 | 94.45 |
TraesCS1D01G284000.2 | Wheat | cytosol, golgi | 94.74 | 94.44 |
Bra001457.1-P | Field mustard | cytosol | 85.91 | 94.39 |
TraesCS1A01G285000.2 | Wheat | cytosol, golgi | 94.58 | 94.29 |
KRH70484 | Soybean | cytosol | 81.58 | 94.11 |
TraesCS3D01G352400.2 | Wheat | cytosol, golgi | 94.12 | 93.97 |
TraesCS3D01G351900.1 | Wheat | cytosol | 94.74 | 93.86 |
TraesCS3B01G390700.1 | Wheat | cytosol | 94.74 | 93.86 |
AT3G12580.1 | Thale cress | cytosol | 94.43 | 93.85 |
CDY00784 | Canola | cytosol | 94.27 | 93.69 |
KRH01631 | Soybean | endoplasmic reticulum | 94.12 | 93.68 |
CDX73815 | Canola | cytosol | 94.43 | 93.56 |
CDY52661 | Canola | cytosol | 93.65 | 93.51 |
TraesCS3B01G390800.1 | Wheat | cytosol | 89.63 | 93.39 |
Bra038734.1-P | Field mustard | cytosol | 93.96 | 93.38 |
CDY50531 | Canola | cytosol | 93.96 | 93.38 |
Os03t0276500-01 | Rice | plasma membrane | 93.81 | 93.23 |
Os03t0821100-01 | Rice | plasma membrane | 93.5 | 93.07 |
Os03t0277300-01 | Rice | plastid | 91.33 | 90.35 |
HORVU3Hr1G086500.3 | Barley | cytosol, plastid | 95.36 | 87.38 |
Os03t0276800-01 | Rice | cytosol | 60.53 | 69.82 |
Os11t0187600-01 | Rice | cytosol | 50.15 | 66.26 |
Os02t0115900-02 | Rice | plasma membrane | 63.93 | 62.11 |
Os11t0187500-01 | Rice | cytosol, mitochondrion, plastid | 52.32 | 58.58 |
Os03t0710500-00 | Rice | extracellular, plasma membrane | 59.29 | 57.25 |
Os05t0428600-01 | Rice | extracellular, plasma membrane | 60.06 | 56.48 |
Os05t0367800-00 | Rice | plasma membrane | 55.11 | 53.21 |
Os08t0197700-00 | Rice | plasma membrane | 59.29 | 50.13 |
Os05t0303000-01 | Rice | plastid | 33.13 | 46.62 |
Os02t0774300-01 | Rice | mitochondrion | 48.3 | 45.95 |
Os03t0113700-01 | Rice | mitochondrion | 47.83 | 45.71 |
Os09t0491772-01 | Rice | mitochondrion | 46.59 | 44.01 |
Os12t0244100-01 | Rice | plastid | 46.75 | 43.27 |
Protein Annotations
Gene3D:1.20.1270.10 | MapMan:19.1.5.1 | Gene3D:2.60.34.10 | Gene3D:3.30.30.30 | Gene3D:3.30.420.40 | Gene3D:3.90.640.10 |
EntrezGene:4327388 | EntrezGene:4339012 | ProteinID:AAT39165.1 | EMBL:AK243004 | EMBL:AK243277 | ProteinID:BAB67894.1 |
ProteinID:BAB93214.1 | ProteinID:BAF06671.1 | ProteinID:BAF17668.1 | ProteinID:BAS75149.1 | ProteinID:BAS94400.1 | ncoils:Coil |
ProteinID:EAZ14100.1 | ProteinID:EEE63984.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 |
EMBL:GQ848068 | EMBL:GU120335 | InterPro:HSP70_C_sf | InterPro:HSP70_peptide-bd_sf | InterPro:Heat_shock_70_CS | InterPro:Hsp_70_fam |
InterPro:IPR029047 | InterPro:IPR029048 | EnsemblPlantsGene:Os05g0460000 | EnsemblPlants:Os05t0460000-01 | PFAM:PF00012 | PRINTS:PR00301 |
ScanProsite:PS00297 | ScanProsite:PS00329 | ScanProsite:PS01036 | PANTHER:PTHR19375 | PANTHER:PTHR19375:SF323 | UniProt:Q6L509 |
SUPFAM:SSF100920 | SUPFAM:SSF100934 | SUPFAM:SSF53067 | UniParc:UPI0000378055 | RefSeq:XP_015618966.1 | RefSeq:XP_015640166.1 |
SEG:seg | : | : | : | : | : |
Description
CYTOSOLIC HEAT SHOCK PROTEIN 70-1Similar to 70 kDa heat shock cognate protein 1. (Os05t0460000-01)
Coordinates
chr5:-:22599462..22602556
Molecular Weight (calculated)
70839.3 Da
IEP (calculated)
4.836
GRAVY (calculated)
-0.420
Length
646 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKGEGPAIG IDLGTTYSCV GVWQHDRVEI IANDQGNRTT PSYVAFTDTE RLIGDAAKNQ VAMNPTNTVF DAKRLIGRRF SDPSVQSDMK LWPFKVVPGP
101: GDKPMIVVQY KGEEKQFAAE EISSMVLIKM REIAEAYLGS SIKNAVVTVP AYFNDSQRQA TKDAGVIAGL NVMRIINEPT AAAIAYGLDK KATSSGEKNV
201: LIFDLGGGTF DVSLLTIEEG IFEVKATAGD THLGGEDFDN RMVNHFVQEF KRKNKKDISG NPRALRRLRT ACERAKRTLS STAQTTIEID SLYEGIDFYT
301: TITRARFEEL NMDLFRKCME PVEKCLRDAK MDKSSVHDVV LVGGSTRIPK VQQLLQDFFN GKELCKSINP DEAVAYGAAV QAAILSGEGN EKVQDLLLLD
401: VTPLSLGLET AGGVMTVLIP RNTTIPTKKE QVFSTYSDNQ PGVLIQVYEG ERARTKDNNL LGKFELSGIP PAPRGVPQIN VCFDIDANGI LNVSAEDKTT
501: GQKNKITITN DKGRLSKEEI EKMVQEAEKY KAEDEEHKKK VDAKNALENY AYNMRNTIKD EKIASKLAAD DKKRIEDAID GAISWLDTNQ LAEADEFEDK
601: MKELEGICNP IIAKMYQGPG ADMAGGMDED APAGGSGAGP KIEEVD
101: GDKPMIVVQY KGEEKQFAAE EISSMVLIKM REIAEAYLGS SIKNAVVTVP AYFNDSQRQA TKDAGVIAGL NVMRIINEPT AAAIAYGLDK KATSSGEKNV
201: LIFDLGGGTF DVSLLTIEEG IFEVKATAGD THLGGEDFDN RMVNHFVQEF KRKNKKDISG NPRALRRLRT ACERAKRTLS STAQTTIEID SLYEGIDFYT
301: TITRARFEEL NMDLFRKCME PVEKCLRDAK MDKSSVHDVV LVGGSTRIPK VQQLLQDFFN GKELCKSINP DEAVAYGAAV QAAILSGEGN EKVQDLLLLD
401: VTPLSLGLET AGGVMTVLIP RNTTIPTKKE QVFSTYSDNQ PGVLIQVYEG ERARTKDNNL LGKFELSGIP PAPRGVPQIN VCFDIDANGI LNVSAEDKTT
501: GQKNKITITN DKGRLSKEEI EKMVQEAEKY KAEDEEHKKK VDAKNALENY AYNMRNTIKD EKIASKLAAD DKKRIEDAID GAISWLDTNQ LAEADEFEDK
601: MKELEGICNP IIAKMYQGPG ADMAGGMDED APAGGSGAGP KIEEVD
001: MAGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDS ERLIGDAAKN QVAMNPTNTV FDAKRLIGRR YSDPSVQADK SHWPFKVVSG
101: PGEKPMIVVN HKGEEKQFSA EEISSMVLIK MREIAEAFLG SPVKNAVVTV PAYFNDSQRQ ATKDAGVISG LNVMRIINEP TAAAIAYGLD KKASSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKNKKDIT GNPRALRRLR TACERAKRTL SSTAQTTIEI DSLFEGIDFY
301: TTITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSSVHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTVLI PRNTTIPTKK EQIFSTYSDN QPGVLIQVYE GERARTKDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKEE IEKMVQEAEK YKAEDEEHKK KVDAKNALEN YAYNMRNTIK DEKIASKLDA ADKKKIEDAI DQAIEWLDGN QLAEADEFED
601: KMKELESLCN PIIARMYQGA GPDMGGAGGM DDDTPAGGSG GAGPKIEEVD
101: PGEKPMIVVN HKGEEKQFSA EEISSMVLIK MREIAEAFLG SPVKNAVVTV PAYFNDSQRQ ATKDAGVISG LNVMRIINEP TAAAIAYGLD KKASSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKNKKDIT GNPRALRRLR TACERAKRTL SSTAQTTIEI DSLFEGIDFY
301: TTITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSSVHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTVLI PRNTTIPTKK EQIFSTYSDN QPGVLIQVYE GERARTKDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKEE IEKMVQEAEK YKAEDEEHKK KVDAKNALEN YAYNMRNTIK DEKIASKLDA ADKKKIEDAI DQAIEWLDGN QLAEADEFED
601: KMKELESLCN PIIARMYQGA GPDMGGAGGM DDDTPAGGSG GAGPKIEEVD
Arabidopsis Description
MED37CProbable mediator of RNA polymerase II transcription subunit 37c [Source:UniProtKB/Swiss-Prot;Acc:Q9LHA8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.