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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, plastid, nucleus

Predictor Summary:
  • cytosol 4
  • plastid 1
  • mitochondrion 2
  • endoplasmic reticulum 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, plasma membrane, plastid
Any Predictor:cytosol, endoplasmic reticulum, mitochondrion, plastid
BaCelLo:cytosol
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:endoplasmic reticulum, mitochondrion
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 nucleus: 18022940
plasma membrane: 18260611
nucleus: 19621931
plastid: 21433289
extracellular: 24083427
plasma membrane: 27800704
plastid: 27992503
msms PMID: 18022940 doi
F Tan, G Li, BR Chitteti, Z Peng
Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 18260611 doi
SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic
Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au
msms PMID: 21433289 doi
S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
msms PMID: 24083427 doi
T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu
Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.
msms PMID: 19621931 doi
T Aki, S Yanagisawa
Department of Applied Biological Chemistry, The University of Tokyo, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0624500-01
Os03t0854500-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G12580.1 Os01t0624500-01 AT4G11260.1 18065690
AT3G12580.1 Os03t0854500-01 AT4G17750.1 11807141
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os05t0460000-01 Rice cytosol, nucleus, plastid 97.07 97.37
Os11t0703900-01 Rice extracellular, plasma membrane 95.37 95.22
KRH01631 Soybean endoplasmic reticulum 94.91 94.76
Bra001457.1-P Field mustard cytosol 85.96 94.73
KRH70484 Soybean cytosol 81.79 94.64
AT3G12580.1 Thale cress cytosol 94.6 94.31
CDX73815 Canola cytosol 94.75 94.17
CDY00784 Canola cytosol 94.44 94.15
Os03t0276500-01 Rice plasma membrane 94.44 94.15
CDY52661 Canola cytosol 93.98 94.13
Bra038734.1-P Field mustard cytosol 94.29 94.0
CDY50531 Canola cytosol 94.29 94.0
Os03t0821100-01 Rice plasma membrane 94.14 93.99
Os03t0277300-01 Rice plastid 91.2 90.51
Os03t0276800-01 Rice cytosol 60.03 69.46
Os11t0187600-01 Rice cytosol 49.85 66.05
Os02t0115900-02 Rice plasma membrane 64.2 62.56
Os11t0187500-01 Rice cytosol, mitochondrion, plastid 52.31 58.75
Os03t0710500-00 Rice extracellular, plasma membrane 59.1 57.25
Os05t0428600-01 Rice extracellular, plasma membrane 60.19 56.77
Os05t0367800-00 Rice plasma membrane 55.25 53.51
Os08t0197700-00 Rice plasma membrane 59.41 50.39
Os05t0303000-01 Rice plastid 33.02 46.62
Os02t0774300-01 Rice mitochondrion 48.61 46.39
Os03t0113700-01 Rice mitochondrion 47.84 45.86
Os09t0491772-01 Rice mitochondrion 46.6 44.15
Os12t0244100-01 Rice plastid 46.76 43.41
Protein Annotations
Gene3D:1.20.1270.10MapMan:19.1.5.1Gene3D:2.60.34.10Gene3D:3.30.30.30Gene3D:3.30.420.40Gene3D:3.90.640.10
EntrezGene:4327388EMBL:AK243277ProteinID:BAB67894.1ProteinID:BAB93214.1ProteinID:BAF06671.1ProteinID:BAS75149.1
ncoils:CoilProteinID:EAZ14100.1GO:GO:0000166GO:GO:0003674GO:GO:0005488GO:GO:0005524
EMBL:GQ848068EMBL:GU120335InterPro:HSP70_C_sfInterPro:HSP70_peptide-bd_sfInterPro:Heat_shock_70_CSInterPro:Hsp_70_fam
InterPro:IPR029047InterPro:IPR029048EnsemblPlantsGene:Os01g0840100EnsemblPlants:Os01t0840100-01PFAM:PF00012PRINTS:PR00301
ScanProsite:PS00297ScanProsite:PS00329ScanProsite:PS01036PANTHER:PTHR19375PANTHER:PTHR19375:SF323UniProt:Q943K7
SUPFAM:SSF100920SUPFAM:SSF100934SUPFAM:SSF53067UniParc:UPI00000ABCA7RefSeq:XP_015618966.1SEG:seg
Description
heat-shock protein 70, heat-shock protein cognate 70, Mediator 37_1Heat shock protein Hsp70 family protein. (Os01t0840100-01)
Coordinates
chr1:+:36039716..36043151
Molecular Weight (calculated)
70955.4 Da
IEP (calculated)
4.834
GRAVY (calculated)
-0.400
Length
648 amino acids
Sequence
(BLAST)
001: MAKGEGPAIG IDLGTTYSCV GVWQHDRVEI IANDQGNRTT PSYVAFTDSE RLIGDAAKNQ VAMNPINTVF DAKRLIGRRF SDPSVQSDMK LWPFKVIPGP
101: GDKPMIVVQY KGEEKQFSAE EISSMVLIKM REIAEAYLGS NIKNAVVTVP AYFNDSQRQA TKDAGVIAGL NVMRIINEPT AAAIAYGLDK KATSSGEKNV
201: LIFDLGGGTF DVSLLTIEEG IFEVKATAGD THLGGEDFDN RMVNHFVLEF KRKNKKDISG NPRALRRLRT ACERAKRTLS STAQTTIEID SLYEGIDFYS
301: TITRARFEEL NMDLFRKCME PVEKCLRDAK MDKSSVHDVV LVGGSTRIPK VQQLLQDFFN GKELCKSINP DEAVAYGAAV QAAILSGEGN EKVQDLLLLD
401: VTPLSLGLET AGGVMTVLIP RNTTIPTKKE QVFSTYSDNQ PGVLIQVYEG ERARTKDNNL LGKFELSGIP PAPRGVPQIT VCFDIDANGI LNVSAEDKTT
501: GQKNKITITN DKGRLSKEEI EKMVQEAEKY KAEDEEHKKK VDAKNALENY AYNMRNTIKD DKIASKLSAD DKKKIEDAID GAINWLDSNQ LAEADEFEDK
601: MKELESICNP IIAKMYQGAG ADMGGAAGMD EDAPAGGSGA GPKIEEVD
Best Arabidopsis Sequence Match ( AT3G12580.1 )
(BLAST)
001: MAGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDS ERLIGDAAKN QVAMNPTNTV FDAKRLIGRR YSDPSVQADK SHWPFKVVSG
101: PGEKPMIVVN HKGEEKQFSA EEISSMVLIK MREIAEAFLG SPVKNAVVTV PAYFNDSQRQ ATKDAGVISG LNVMRIINEP TAAAIAYGLD KKASSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKNKKDIT GNPRALRRLR TACERAKRTL SSTAQTTIEI DSLFEGIDFY
301: TTITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSSVHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTVLI PRNTTIPTKK EQIFSTYSDN QPGVLIQVYE GERARTKDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKEE IEKMVQEAEK YKAEDEEHKK KVDAKNALEN YAYNMRNTIK DEKIASKLDA ADKKKIEDAI DQAIEWLDGN QLAEADEFED
601: KMKELESLCN PIIARMYQGA GPDMGGAGGM DDDTPAGGSG GAGPKIEEVD
Arabidopsis Description
MED37CProbable mediator of RNA polymerase II transcription subunit 37c [Source:UniProtKB/Swiss-Prot;Acc:Q9LHA8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.