CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

cytosol: 16847873
extracellular: 29364282

msms PMID: 29364282 doi

S Pahlow, A Ostendorp, L Krüßel, J Kehr

Molecular Plant Genetics, Universität Hamburg., Molecular Plant Genetics, Universität Hamburg; julia.kehr@uni-hamburg.de.

msms PMID: 16847873 doi

V Katavic, GK Agrawal, M Hajduch, SL Harris, JJ Thelen

University of Missouri-Columbia, Department of Biochemistry, Columbia 65211, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX78797
CDX86798
CDX90794
CDY05137
CDY13243
CDY60785
CDY63435

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12580.1	CDX86798	AT4G11260.1	18065690
AT3G12580.1	CDX90794	AT4G11260.1	18065690
AT3G12580.1	CDY05137	AT4G11260.1	18065690
AT3G12580.1	CDY13243	AT4G11260.1	18065690
AT3G12580.1	CDY63435	AT4G11260.1	18065690
AT3G12580.1	CDX78797	AT4G17750.1	11807141
AT3G12580.1	CDY60785	AT4G17750.1	11807141

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52661	Canola	cytosol	99.08	99.54
Bra038734.1-P	Field mustard	cytosol	99.38	99.38
CDY00784	Canola	cytosol	98.46	98.46
CDX73815	Canola	cytosol	98.62	98.31
AT3G12580.1	Thale cress	cytosol	97.38	97.38
EES19649	Sorghum	cytosol	94.62	94.76
Os01t0840100-01	Rice	nucleus, plasma membrane, plastid	94.0	94.29
HORVU1Hr1G072220.4	Barley	cytosol	85.23	94.06
KRH01631	Soybean	endoplasmic reticulum	93.85	93.99
Os05t0460000-01	Rice	cytosol, nucleus, plastid	93.38	93.96
KRH70484	Soybean	cytosol	80.77	93.75
TraesCS1B01G294300.1	Wheat	cytosol, golgi, unclear	93.23	93.52
TraesCS1A01G285000.2	Wheat	cytosol, golgi	93.23	93.52
KXG26133	Sorghum	cytosol	88.62	93.51
TraesCS1D01G284000.2	Wheat	cytosol, golgi	93.08	93.36
Zm00001d010529_P001	Maize	cytosol	92.92	93.07
EES01731	Sorghum	cytosol	92.31	92.59
Zm00001d042922_P002	Maize	cytosol	92.31	92.59
Os03t0276500-01	Rice	plasma membrane	92.31	92.31
TraesCS3D01G351900.1	Wheat	cytosol	92.46	92.18
Zm00001d012420_P001	Maize	plasma membrane	91.85	92.13
TraesCS3D01G352400.2	Wheat	cytosol, golgi	91.69	92.12
TraesCS3B01G390700.1	Wheat	cytosol	92.15	91.87
TraesCS3B01G390800.1	Wheat	cytosol	87.38	91.61
HORVU4Hr1G059390.1	Barley	cytosol	91.54	91.4
TraesCS4D01G207500.1	Wheat	cytosol	91.38	91.24
TraesCS4B01G206700.1	Wheat	cytosol	91.38	91.24
EER95095	Sorghum	cytosol	91.08	91.22
Zm00001d028630_P005	Maize	cytosol, extracellular, nucleus, plasma membrane, plastid	90.46	90.6
TraesCS4A01G097900.2	Wheat	cytosol	91.23	90.53
HORVU3Hr1G086500.3	Barley	cytosol, plastid	92.92	85.67
CDY40362	Canola	cytosol, mitochondrion	59.69	85.46
CDX83960	Canola	cytosol	83.85	83.85
CDY33359	Canola	cytosol	66.77	83.78
CDY35063	Canola	cytosol	66.62	83.59
CDX96825	Canola	cytosol	83.08	83.08
CDY49668	Canola	cytosol	62.77	81.93
CDX67525	Canola	endoplasmic reticulum	54.77	61.7
CDY22648	Canola	cytosol	56.92	61.16
CDY63497	Canola	endoplasmic reticulum	60.15	60.9
CDX77423	Canola	cytosol, endoplasmic reticulum	60.15	60.9
CDY46766	Canola	endoplasmic reticulum	59.85	60.59
CDX79726	Canola	endoplasmic reticulum	59.85	60.59
CDY23972	Canola	endoplasmic reticulum	59.85	60.59
CDX84809	Canola	endoplasmic reticulum	59.85	60.59
CDY13371	Canola	cytosol, endoplasmic reticulum	62.46	60.33
CDY06347	Canola	endoplasmic reticulum	56.92	57.63
CDY24832	Canola	cytosol	45.08	46.88
CDY34275	Canola	cytosol	45.08	46.88
CDY08914	Canola	cytosol	44.77	46.86
CDY11007	Canola	cytosol	44.62	46.62
CDX85810	Canola	mitochondrion	48.46	46.32
CDX81132	Canola	mitochondrion	48.31	46.11
CDY56552	Canola	mitochondrion	48.31	46.11
CDX90397	Canola	mitochondrion	47.54	45.58
CDY49682	Canola	mitochondrion	47.54	45.37
CDX69342	Canola	mitochondrion	46.46	44.41
CDX75683	Canola	mitochondrion	46.46	44.28
CDX92631	Canola	plastid	46.31	42.51
CDY03462	Canola	plastid	46.46	42.42
CDY03461	Canola	plastid	44.62	40.79
CDY44807	Canola	mitochondrion	47.38	38.99
CDY03459	Canola	cytosol	39.08	38.37
CDY49667	Canola	nucleus	2.62	22.67

Protein Annotations

Gene3D:1.20.1270.10	MapMan:19.1.5.1	Gene3D:2.60.34.10	Gene3D:3.30.30.30	Gene3D:3.30.420.40	Gene3D:3.90.640.10
GO:A0A078IKL8	UniProt:A0A078IKL8	EnsemblPlants:CDY50531	ProteinID:CDY50531	ProteinID:CDY50531.1	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00096953001	InterPro:HSP70_C_sf
InterPro:HSP70_peptide-bd_sf	InterPro:Heat_shock_70_CS	InterPro:Hsp_70_fam	InterPro:IPR029047	InterPro:IPR029048	PFAM:PF00012
PRINTS:PR00301	ScanProsite:PS00297	ScanProsite:PS00329	ScanProsite:PS01036	PANTHER:PTHR19375	PANTHER:PTHR19375:SF323
SUPFAM:SSF100920	SUPFAM:SSF100934	SUPFAM:SSF53067	UniParc:UPI0004EDF513	SEG:seg	:

Description

BnaA01g30490DBnaA01g30490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IKL8]

Coordinates

chrLK032921:-:29098..31819

Molecular Weight (calculated)

71289.7 Da

IEP (calculated)

4.846

GRAVY (calculated)

-0.430

Length

650 amino acids

Sequence
(BLAST)

001: MAGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDS ERLIGDAAKN QVAMNPTNTV FDAKRLIGRR FSDPSVQADM RHWPFKVISG
101: PAEKPMIVVN YKGEEKQFSA EEISSMVLTK MREIAEAFLG TSVKNAVVTV PAYFNDSQRQ ATKDAGVISG LNVMRIINEP TAAAIAYGLD KKASSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKHKKDIT GNPRALRRLR TACERAKRTL SSTAQTTIEI DSLYEGIDFY
301: TTITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSNVHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTVLI PRNTTIPTKK EQIFSTYSDN QPGVLIQVYE GERARTKDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKEE IEKMVQEAEK YKAEDEEHKK KVDAKNALEN YAYNMRNTIK DEKIASKLDA ADKKKIEDAI DQAIEWLEGN QLAEADEFED
601: KMKELESLCN PIIARMYQGA GGDMGGAGGM DDDAPADASG GAGPKIEEVD

Best Arabidopsis Sequence Match ( AT3G12580.1 )
(BLAST)

001: MAGKGEGPAI GIDLGTTYSC VGVWQHDRVE IIANDQGNRT TPSYVAFTDS ERLIGDAAKN QVAMNPTNTV FDAKRLIGRR YSDPSVQADK SHWPFKVVSG
101: PGEKPMIVVN HKGEEKQFSA EEISSMVLIK MREIAEAFLG SPVKNAVVTV PAYFNDSQRQ ATKDAGVISG LNVMRIINEP TAAAIAYGLD KKASSVGEKN
201: VLIFDLGGGT FDVSLLTIEE GIFEVKATAG DTHLGGEDFD NRMVNHFVQE FKRKNKKDIT GNPRALRRLR TACERAKRTL SSTAQTTIEI DSLFEGIDFY
301: TTITRARFEE LNMDLFRKCM EPVEKCLRDA KMDKSSVHDV VLVGGSTRIP KVQQLLQDFF NGKELCKSIN PDEAVAYGAA VQAAILSGEG NEKVQDLLLL
401: DVTPLSLGLE TAGGVMTVLI PRNTTIPTKK EQIFSTYSDN QPGVLIQVYE GERARTKDNN LLGKFELSGI PPAPRGVPQI TVCFDIDANG ILNVSAEDKT
501: TGQKNKITIT NDKGRLSKEE IEKMVQEAEK YKAEDEEHKK KVDAKNALEN YAYNMRNTIK DEKIASKLDA ADKKKIEDAI DQAIEWLDGN QLAEADEFED
601: KMKELESLCN PIIARMYQGA GPDMGGAGGM DDDTPAGGSG GAGPKIEEVD

Arabidopsis Description

MED37CProbable mediator of RNA polymerase II transcription subunit 37c [Source:UniProtKB/Swiss-Prot;Acc:Q9LHA8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.