CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69309
CDX73815
CDX75658
CDX91605
CDY00493
CDY00784
CDY06838
CDY06839
CDY27839
CDY40362
CDY46930
CDY50297
CDY50531
CDY52661

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11260.1	CDX73815	AT3G12580.1	18065690
AT4G11260.1	CDY00784	AT3G12580.1	18065690
AT4G11260.1	CDY50531	AT3G12580.1	18065690
AT4G11260.1	CDY52661	AT3G12580.1	18065690
AT4G11260.1	CDX69309	AT4G37460.1	21798944
AT4G11260.1	CDX75658	AT4G37460.1	21798944
AT4G11260.1	CDY06838	AT4G37460.1	21798944
AT4G11260.1	CDY06839	AT4G37460.1	21798944
AT4G11260.1	CDY40362	AT5G02500.1	18065690
AT4G11260.1	CDX91605	AT5G51700.1	11847307
AT4G11260.1	CDY00493	AT5G51700.1	11847307
AT4G11260.1	CDY46930	AT5G51700.1	11847307
AT4G11260.1	CDX91605	AT5G51700.1	18065690
AT4G11260.1	CDY00493	AT5G51700.1	18065690
AT4G11260.1	CDY46930	AT5G51700.1	18065690
AT4G11260.1	CDY27839	AT5G52640.1	18065690
AT4G11260.1	CDY50297	AT5G52640.1	18065690

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28656	Canola	cytosol	15.31	64.29
CDY43481	Canola	cytosol	15.31	64.29
CDY05137	Canola	cytosol	66.33	54.32
Os01t0624500-01	Rice	cytosol, nucleus	21.09	52.54
CDY13243	Canola	cytosol	62.59	51.69
CDX86798	Canola	cytosol	62.59	51.54
AT4G11260.1	Thale cress	cytosol	60.88	50.0
CDX90794	Canola	cytosol	60.54	49.58
CDX94203	Canola	cytosol	51.02	43.6
CDY10946	Canola	cytosol	48.98	41.86
CDY10892	Canola	endoplasmic reticulum, golgi	26.19	40.74
Solyc06g036420.1.1	Tomato	cytosol	40.48	40.2
CDY10894	Canola	cytosol	47.62	39.44
CDY44117	Canola	cytosol	47.28	38.94
CDY44118	Canola	endoplasmic reticulum, plastid, vacuole	28.23	37.73
Solyc03g007670.2.1	Tomato	cytosol, extracellular	46.6	37.03
PGSC0003DMT400053839	Potato	cytosol, mitochondrion	46.26	36.76
VIT_16s0050g01510.t01	Wine grape	cytosol	44.9	36.57
KRH38332	Soybean	cytosol, nucleus	43.88	35.93
KRH08815	Soybean	nucleus	43.54	35.65
KRH35228	Soybean	cytosol	42.18	34.73
KRH77588	Soybean	cytosol	42.18	34.35
Zm00001d044172_P002	Maize	extracellular	41.5	33.8
Zm00001d011401_P001	Maize	extracellular	41.16	33.52
GSMUA_Achr7P10850_001	Banana	cytosol	41.84	33.52
PGSC0003DMT400074364	Potato	cytosol	42.18	33.42
EES01101	Sorghum	cytosol	41.16	33.24
HORVU3Hr1G055920.7	Barley	cytosol	41.5	32.71
KRH27885	Soybean	cytosol	41.5	32.62
GSMUA_Achr7P14290_001	Banana	cytosol	40.48	32.16
GSMUA_Achr4P15560_001	Banana	cytosol	38.78	30.89
TraesCS3B01G255300.1	Wheat	cytosol	39.12	30.5
TraesCS3D01G227500.3	Wheat	golgi	41.5	28.84
VIT_02s0025g00450.t01	Wine grape	cytosol	29.25	25.44
KRG94038	Soybean	cytosol, mitochondrion, nucleus	5.44	21.92
VIT_12s0035g01560.t01	Wine grape	cytosol, plasma membrane, vacuole	17.69	20.55
Solyc06g036410.1.1	Tomato	cytosol	3.74	16.67
CDY71639	Canola	cytosol, plastid	6.12	15.13

Protein Annotations

EnsemblPlants:CDY63435	EnsemblPlantsGene:GSBRNA2T00039292001	Gene3D:2.60.40.790	InterPro:CS_dom	InterPro:HSP20-like_chaperone	InterPro:IPR007052
InterPro:IPR007699	InterPro:IPR008978	InterPro:SGS_dom	ncoils:Coil	PANTHER:PTHR22904	PANTHER:PTHR22904:SF496
PFAM:PF04969	PFAM:PF05002	PFscan:PS51048	ProteinID:CDY63435	ProteinID:CDY63435.1	SEG:seg
SUPFAM:SSF49764	UniParc:UPI0004EE4035	UniProt:A0A078JBG4	MapMan:35.1	:	:

Description

BnaCnng42110DBnaCnng42110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JBG4]

Coordinates

chrLK034299:-:30596..32307

Molecular Weight (calculated)

33513.3 Da

IEP (calculated)

9.064

GRAVY (calculated)

-0.459

Length

294 amino acids

Sequence
(BLAST)

001: MRTKPSSWSL LWPKLTSERA MNDIVIISHT ACYLEKYSTA KSALEKGASV APNESKFKKM LDECNLLIAE EEKDLVQQMP PTFPSNSTTP LATAADDPPL
101: PSPAKPMFRH EFYQKPEEVV VTIFAKGIPK QNVNVEFGDQ IVKDAYRFQP RLFGKMIPEK CRYEVLSTNV QVPLLPKSNV ASVVSHRPVY PSSKPRKDWD
201: KLEAEVKKQS ADEDMRRAMK KSFAESNGTV LSTNWKEVGT KKVESTPPDG IELKKWEYLF KYSFLCLVKN SDKYLNFNLF WFLLEFSLHS CGAV

Best Arabidopsis Sequence Match ( AT4G11260.1 )
(BLAST)

001: MAKELAEKAK EAFLDDDFDV AVDLYSKAID LDPNCAAFFA DRAQANIKID NFTEAVVDAN KAIELEPTLA KAYLRKGTAC MKLEEYSTAK AALEKGASVA
101: PNEPKFKKMI DECDLRIAEE EKDLVQPMPP SLPSSSTTPL ATEADAPPVP IPAAPAKPMF RHEFYQKPEE AVVTIFAKKV PKENVTVEFG EQILSVVIDV
201: AGEEAYHLQP RLFGKIIPEK CRFEVLSTKV EIRLAKAEII TWASLEYGKG QSVLPKPNVS SALSQRPVYP SSKPAKDWDK LEAEVKKQEK DEKLDGDAAM
301: NKFFSDIYSS ADEDMRRAMN KSFAESNGTV LSTNWKEVGT KKVESTPPDG MELKKWEY

Arabidopsis Description

SGT1BSGT1B [Source:UniProtKB/TrEMBL;Acc:A0A178UX37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.