CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX86798
CDX90794
CDY05137
CDY13243
CDY27839
CDY50297
CDY63435

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51700.1	CDX86798	AT4G11260.1	18065690
AT5G51700.1	CDX90794	AT4G11260.1	18065690
AT5G51700.1	CDY05137	AT4G11260.1	18065690
AT5G51700.1	CDY13243	AT4G11260.1	18065690
AT5G51700.1	CDY63435	AT4G11260.1	18065690
AT5G51700.1	CDY27839	AT5G52640.1	18065690
AT5G51700.1	CDY50297	AT5G52640.1	18065690

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028270.1-P	Field mustard	nucleus	99.13	99.13
CDX91605	Canola	nucleus	86.09	87.22
CDY46930	Canola	nucleus	85.65	86.78
AT5G51700.1	Thale cress	nucleus	78.7	80.09
Zm00001d050655_P001	Maize	nucleus	26.96	66.67
GSMUA_AchrUn_...	Banana	nucleus	61.3	65.89
Os02t0535400-01	Rice	cytosol, nucleus	51.3	65.19
VIT_16s0022g02040.t01	Wine grape	nucleus	61.74	65.14
KRH35422	Soybean	nucleus	60.87	62.5
Solyc11g072290.1.1	Tomato	nucleus	60.87	61.95
KXG30344	Sorghum	nucleus	60.0	61.06
PGSC0003DMT400070430	Potato	nucleus	35.22	60.9
KRG91395	Soybean	nucleus	59.13	60.71
TraesCS2B01G433400.1	Wheat	cytosol	60.43	60.17
TraesCS2A01G414300.2	Wheat	cytosol	60.0	59.74
TraesCS2D01G411600.1	Wheat	cytosol	60.43	59.66
HORVU2Hr1G097800.8	Barley	cytosol, nucleus, plastid	60.43	49.12

Protein Annotations

EnsemblPlants:CDY00493	EnsemblPlantsGene:GSBRNA2T00110207001	InterPro:CHORD_dom	InterPro:IPR007051	PANTHER:PTHR12621	PANTHER:PTHR12621:SF9
PFAM:PF04968	PFscan:PS51401	ProteinID:CDY00493	ProteinID:CDY00493.1	SEG:seg	UniParc:UPI0004EF0DE3
MapMan:26.8.2.5	:	:	:	:	:

Description

BnaA10g07800D

Coordinates

chrLK031919:-:687552..690114

Molecular Weight (calculated)

25516.1 Da

IEP (calculated)

6.990

GRAVY (calculated)

-0.661

Length

230 amino acids

Sequence
(BLAST)

001: MEVGSATKLQ CQRIGCNAMF TDDDNPDGSC QFHASPFFHD GMKEWSCCKQ RSHDFTLFLE IPGCKKGKHT TEKPVLAKPA PRQPPITVPT SSPVANAAAT
101: LKDSCSRCRQ GFFCSDHGSQ PKGQIRQDLS TPVVQAQEED IETLAPPPPV KKVVIDINEP QVCKNKGCDK TFKERDNHET ACSYHPGPAV FHDRLRGWKC
201: CDVHVKEFDE FMEIPPCSKG WHSSSADQAV

Best Arabidopsis Sequence Match ( AT5G51700.1 )
(BLAST)

001: MEVGSATKKL QCQRIGCNAM FTDDDNPQGS CQFHASGPFF HDGMKEWSCC KQRSHDFSLF LEIPGCKTGK HTTEKPVLAK SVPKHPVAAP TSSPDANAAT
101: KDSCSRCRQG FFCSDHGSQP KEQIKQTLNT PGQAEEEKIE PLAPPVQKAV IDINQPQVCK NKGCGQTFKE RDNHETACSH HPGPAVFHDR LRGWKCCDVH
201: VKEFDEFMEI PPCTKGWHSS SPDPAV

Arabidopsis Description

RAR1Cysteine and histidine-rich domain-containing protein RAR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SE33]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.