CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

cytosol: 19562800
extracellular: 29364282

msms PMID: 19562800 doi

P Jolivet, C Boulard, A Bellamy, C Larré, M Barre, H Rogniaux, S d'Andréa, T Chardot, N Nesi

NRA, UMR 206, Chimie Biologique, Thiverval-Grignon, France. jolivet@grignon.inra.fr

msms PMID: 29364282 doi

S Pahlow, A Ostendorp, L Krüßel, J Kehr

Molecular Plant Genetics, Universität Hamburg., Molecular Plant Genetics, Universität Hamburg; julia.kehr@uni-hamburg.de.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73664
CDX78057
CDX83217
CDX86798
CDX90622
CDX90794
CDX91605
CDY00493
CDY05137
CDY13243
CDY21503
CDY29061
CDY34049
CDY46930
CDY63435
CDY64639

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G52640.1	CDX83217	AT2G26150.1	19366428
AT5G52640.1	CDY21503	AT2G26150.1	19366428
AT5G52640.1	CDX73664	AT3G21640.1	12410806
AT5G52640.1	CDX78057	AT3G21640.1	12410806
AT5G52640.1	CDX90622	AT3G21640.1	12410806
AT5G52640.1	CDY29061	AT3G21640.1	12410806
AT5G52640.1	CDY34049	AT3G21640.1	12410806
AT5G52640.1	CDY64639	AT3G21640.1	12410806
AT5G52640.1	CDX86798	AT4G11260.1	18065690
AT5G52640.1	CDX90794	AT4G11260.1	18065690
AT5G52640.1	CDY05137	AT4G11260.1	18065690
AT5G52640.1	CDY13243	AT4G11260.1	18065690
AT5G52640.1	CDY63435	AT4G11260.1	18065690
AT5G52640.1	CDX91605	AT5G51700.1	18065690
AT5G52640.1	CDY00493	AT5G51700.1	18065690
AT5G52640.1	CDY46930	AT5G51700.1	18065690

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G52640.1	Thale cress	cytosol	96.74	97.43
KRH38373	Soybean	nucleus	93.19	93.99
KRH08858	Soybean	nucleus	92.62	93.42
Solyc03g007890.2.1	Tomato	cytosol, extracellular, nucleus, plastid	92.34	93.13
PGSC0003DMT400024594	Potato	cytosol	92.91	93.04
VIT_16s0050g01150.t01	Wine grape	cytosol	92.06	92.19
VIT_02s0025g00280.t01	Wine grape	cytosol	91.63	91.89
GSMUA_Achr8P19130_001	Banana	cytosol	74.61	90.38
TraesCS2A01G033700.1	Wheat	plastid	89.36	89.11
TraesCS2D01G033200.2	Wheat	golgi	89.93	89.04
CDY11961	Canola	cytosol	45.67	88.46
TraesCS2B01G047400.1	Wheat	cytosol	89.22	88.34
CDY50297	Canola	plastid	79.57	88.21
EES11741	Sorghum	cytosol	88.94	87.57
Os04t0107900-02	Rice	cytosol	30.92	87.55
Zm00001d024903_P001	Maize	plasma membrane	88.65	87.53
CDY11967	Canola	cytosol	70.92	86.81
CDY06544	Canola	cytosol	14.04	86.09
CDY22598	Canola	cytosol	57.59	85.47
CDY06551	Canola	cytosol	67.38	82.9
CDY64982	Canola	cytosol	64.4	82.7
CDY36807	Canola	cytosol	67.38	82.61
CDY20742	Canola	cytosol	64.4	82.4
CDY11921	Canola	cytosol	62.41	81.94
CDY36772	Canola	cytosol	41.99	81.54
CDY36776	Canola	cytosol	41.99	81.54
CDY36775	Canola	cytosol	16.31	78.23
CDY36771	Canola	cytosol	16.17	77.55
CDY06546	Canola	cytosol	8.09	77.03
CDY11962	Canola	cytosol	15.74	76.55
CDY50296	Canola	cytosol	6.67	75.81
CDY06545	Canola	cytosol	6.1	70.49
CDY66279	Canola	mitochondrion	28.51	45.89
CDY08910	Canola	endoplasmic reticulum	48.51	43.68
CDY24830	Canola	endoplasmic reticulum	50.5	43.47
CDY03477	Canola	endoplasmic reticulum	50.64	43.43
CDY34264	Canola	endoplasmic reticulum	50.5	43.31
CDX92620	Canola	endoplasmic reticulum	47.94	42.68
CDX83528	Canola	plastid	45.82	41.25
CDY33122	Canola	plastid	45.53	41.0
CDY48069	Canola	plastid	45.67	40.91
CDY04167	Canola	plastid	43.83	40.45
CDY10992	Canola	endoplasmic reticulum	49.79	40.3
CDY35962	Canola	mitochondrion	43.55	38.23
CDY22132	Canola	mitochondrion	43.12	37.81
CDX99788	Canola	plastid	36.88	37.79
CDY28017	Canola	mitochondrion	42.13	37.74
CDY66280	Canola	cytosol	11.21	35.43

Protein Annotations

Gene3D:1.20.120.790	MapMan:19.1.6.1	Gene3D:3.30.230.80	Gene3D:3.30.565.10	Gene3D:3.30.70.2140	Gene3D:3.40.50.11260
GO:A0A078GRJ1	UniProt:A0A078GRJ1	EnsemblPlants:CDY27839	ProteinID:CDY27839	ProteinID:CDY27839.1	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0006457
GO:GO:0006950	GO:GO:0008150	GO:GO:0009605	GO:GO:0009607	GO:GO:0009816	GO:GO:0009987
GO:GO:0051082	GO:GO:0061077	EnsemblPlantsGene:GSBRNA2T00038672001	InterPro:HATPase_C	InterPro:HATPase_C_sf	InterPro:HSP90_C
InterPro:Heat_shock_protein_90_CS	InterPro:Hsp90_N	InterPro:Hsp90_fam	InterPro:IPR036890	InterPro:IPR037196	HAMAP:MF_00505
PFAM:PF00183	PFAM:PF02518	PIRSF:PIRSF002583	PRINTS:PR00775	ScanProsite:PS00298	PANTHER:PTHR11528
PANTHER:PTHR11528:SF74	InterPro:Ribosomal_S5_D2-typ_fold	SMART:SM00387	SUPFAM:SSF110942	SUPFAM:SSF54211	SUPFAM:SSF55874
UniParc:UPI0004EC50FA	SEG:seg	:	:	:	:

Description

BnaC09g28660DBnaC09g28660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GRJ1]

Coordinates

chrLK032210:+:395237..397828

Molecular Weight (calculated)

81052.3 Da

IEP (calculated)

4.681

GRAVY (calculated)

-0.627

Length

705 amino acids

Sequence
(BLAST)

001: MAEVQMADAE TFAFQAEINQ LLSLIINTFY SNKEIFLREL ISNSSDALDK IRFESLTDKS KLDGQPELFI RLVPDKANKT LSIIDSGIGM TKADLVNNLG
101: TIARSGTKEF MEALQAGADV SMIGQFGVGF YSAYLVAEKV IVTTKHNDDE QYVWESQAGG SFTVTRDVDG EPLGRGTKIT LFLKEDQLEY LEERRLKDLV
201: KKHSEFISYP IYLWTEKTTE KEISDDEDED EAKKETEGEV EEVDEEKEKD GKKKKKIKEV SHEWELINKQ KPIWLRKPEE ISKDEYASFY KSLTNDWEDH
301: LAVKHFSVEG QLEFKAILFV PKRAPFDLFD TRKKLNNIKL YVRRVFIMDN CEELIPEYLS FVKGVVDSDD LPLNISRETL QQNKILKVIR KNLVKKCLEM
401: FNEIAENKED YNKFYEAFSK NLKLGIHEDS QNRSKIADLL RYHSTKSGDE MTSLKDYVTR MKEGQKDIFY ITGESKKAVE NSPFLEKLKK RGYEVLYMVD
501: AIDEYAVGQL KEYDGKKLVS ATKEGLKLED ETEEEKKKKE EKKKSFENLC KTIKDILGDK VEKVVVSDRI VDSPCCLVTG EYGWTANMER IMKAQALRDS
601: SMSGYMSSKK TMEINPDNGI MEELRKRAEV DKNDKSVKDL VMLLFETALL TSGFSLDEPN TFAARIHRML KLGLSIDEDE NVEEDGDMPA LEEDAAEESK
701: MEEVD

Best Arabidopsis Sequence Match ( AT5G52640.1 )
(BLAST)

001: MADAETFAFQ AEINQLLSLI INTFYSNKEI FLRELISNSS DALDKIRFES LTDKSKLDGQ PELFIRLVPD KSNKTLSIID SGIGMTKADL VNNLGTIARS
101: GTKEFMEALQ AGADVSMIGQ FGVGFYSAYL VAEKVVVTTK HNDDEQYVWE SQAGGSFTVT RDVDGEPLGR GTKITLFLKD DQLEYLEERR LKDLVKKHSE
201: FISYPIYLWT EKTTEKEISD DEDEDEPKKE NEGEVEEVDE EKEKDGKKKK KIKEVSHEWE LINKQKPIWL RKPEEITKEE YAAFYKSLTN DWEDHLAVKH
301: FSVEGQLEFK AILFVPKRAP FDLFDTRKKL NNIKLYVRRV FIMDNCEELI PEYLSFVKGV VDSDDLPLNI SRETLQQNKI LKVIRKNLVK KCIEMFNEIA
401: ENKEDYTKFY EAFSKNLKLG IHEDSQNRGK IADLLRYHST KSGDEMTSFK DYVTRMKEGQ KDIFYITGES KKAVENSPFL ERLKKRGYEV LYMVDAIDEY
501: AVGQLKEYDG KKLVSATKEG LKLEDETEEE KKKREEKKKS FENLCKTIKE ILGDKVEKVV VSDRIVDSPC CLVTGEYGWT ANMERIMKAQ ALRDSSMSGY
601: MSSKKTMEIN PDNGIMEELR KRAEADKNDK SVKDLVMLLY ETALLTSGFS LDEPNTFAAR IHRMLKLGLS IDEDENVEED GDMPELEEDA AEESKMEEVD

Arabidopsis Description

HSP90-1Heat shock protein 90-1 [Source:UniProtKB/Swiss-Prot;Acc:P27323]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.