Factsheet for PGSC0003DMT400024594

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400017681
PGSC0003DMT400021234
PGSC0003DMT400053839
PGSC0003DMT400070430
PGSC0003DMT400074364

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G52640.1	PGSC0003DMT400021234	AT2G26150.1	19366428
AT5G52640.1	PGSC0003DMT400017681	AT3G21640.1	12410806
AT5G52640.1	PGSC0003DMT400053839	AT4G11260.1	18065690
AT5G52640.1	PGSC0003DMT400074364	AT4G11260.1	18065690
AT5G52640.1	PGSC0003DMT400070430	AT5G51700.1	18065690

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g007890.2.1	Tomato	cytosol, extracellular, nucleus, plastid	98.86	99.57
VIT_16s0050g01150.t01	Wine grape	cytosol	93.89	93.89
KRH38373	Soybean	nucleus	93.18	93.85
PGSC0003DMT400074374	Potato	cytosol	40.77	93.79
KRH08858	Soybean	nucleus	93.04	93.71
VIT_02s0025g00280.t01	Wine grape	cytosol	93.32	93.46
PGSC0003DMT400074377	Potato	cytosol	54.12	93.15
CDY27839	Canola	cytosol	93.04	92.91
AT5G52640.1	Thale cress	cytosol	91.9	92.43
GSMUA_Achr8P19130_001	Banana	cytosol	75.99	91.92
TraesCS2A01G033700.1	Wheat	plastid	89.77	89.39
TraesCS2D01G033200.2	Wheat	golgi	90.2	89.19
EES11741	Sorghum	cytosol	90.2	88.69
Zm00001d024903_P001	Maize	plasma membrane	89.91	88.66
TraesCS2B01G047400.1	Wheat	cytosol	89.63	88.62
Os04t0107900-02	Rice	cytosol	31.11	87.95
PGSC0003DMT400076601	Potato	cytosol	86.22	86.84
PGSC0003DMT400057003	Potato	cytosol	86.08	86.7
PGSC0003DMT400037336	Potato	cytosol	85.94	86.55
PGSC0003DMT400014217	Potato	cytosol	34.66	85.02
Bra003119.1-P	Field mustard	plastid	73.15	84.7
CDY50297	Canola	plastid	74.86	82.86
PGSC0003DMT400014812	Potato	cytosol	23.44	68.75
PGSC0003DMT400025743	Potato	extracellular	51.56	45.04
PGSC0003DMT400050556	Potato	cytosol, plastid	47.73	42.16
PGSC0003DMT400015734	Potato	mitochondrion	44.89	39.8

Protein Annotations

Gene3D:1.20.120.790	EntrezGene:102603244	MapMan:19.1.6.1	Gene3D:3.30.230.80	Gene3D:3.30.565.10	Gene3D:3.30.70.2140
Gene3D:3.40.50.11260	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0006457	GO:GO:0006950	GO:GO:0008150	GO:GO:0009605	GO:GO:0009607
GO:GO:0009816	GO:GO:0009987	GO:GO:0051082	GO:GO:0061077	InterPro:HATPase_C	InterPro:HATPase_C_sf
InterPro:HSP90_C	InterPro:Heat_shock_protein_90_CS	InterPro:Hsp90_N	InterPro:Hsp90_fam	InterPro:IPR036890	InterPro:IPR037196
UniProt:M1AKD9	HAMAP:MF_00505	PFAM:PF00183	PFAM:PF02518	EnsemblPlantsGene:PGSC0003DMG400009509	PGSC:PGSC0003DMG400009509
EnsemblPlants:PGSC0003DMT400024594	PIRSF:PIRSF002583	PRINTS:PR00775	ScanProsite:PS00298	PANTHER:PTHR11528	PANTHER:PTHR11528:SF74
InterPro:Ribosomal_S5_D2-typ_fold	SMART:SM00387	SUPFAM:SSF110942	SUPFAM:SSF54211	SUPFAM:SSF55874	UniParc:UPI0002968839
RefSeq:XP_006362664.1	SEG:seg	:	:	:	:

Description

Heat shock protein 83 [Source:PGSC_GENE;Acc:PGSC0003DMG400009509]

Coordinates

chr3:-:49723607..49727054

Molecular Weight (calculated)

80887.3 Da

IEP (calculated)

4.708

GRAVY (calculated)

-0.605

Length

704 amino acids

Sequence
(BLAST)

001: MADVQMAEAE TFAFQAEINQ LLSLIINTFY SNKEIFLREL ISNSSDALDK IRFESLTDKS KLDAQPELFI RLVPDKANKT LSIIDSGIGM TKADLVNNLG
101: TIARSGTKEF MEALQAGADV SMIGQFGVGF YSAYLVAEKV IVTTKHNDDE QYVWESQAGG SFTVTRDVNG EQLGRGTKIT LFLKEDQLEY LEERRIKDLV
201: KKHSEFISYP IYLWTEKTTE KEISDDEDDE PKKDEEGAVE EVDEDKEKEK GKKKKIKEVS YEWQLINKQK PIWLRKPEEI TKEEYASFYK SLTNDWEDHL
301: AVKHFSVEGQ LEFKAILFVP KRAPFDLFDS RKKMNNIKLY VRRVFIMDNC EELMPEYLGF VKGVVDSDDL PLNISREMLQ QNKILKVIRK NLVKKCIEMF
401: NEIAENKEDY NKFYEAFSKN LKLGIHEDSQ NRAKLADLLR YHSTKSGDEL TSLKDYVTRM KEGQKDIYYI TGESKKAVEN SPFLERLKKK GYEVLYMVDA
501: IDEYAVGQLK EYDGKKLVSA TKEGLKLDDD SEEEKKKKEE KKKSFENLCK IIKDILGDKV EKVVVSDRIV DSPCCLVTGE YGWTANMERI MKAQALRDTS
601: MSSYMSSKKT MEINPDNGIM EELRKRAEAD QNDKSVKDLV LLLFETALLT SGFSLDDPNT FAARIHRMLK LGLSIEEEEE GAGEDADMPA LEEIGEESKM
701: EEVD

Best Arabidopsis Sequence Match ( AT5G52640.1 )
(BLAST)

001: MADAETFAFQ AEINQLLSLI INTFYSNKEI FLRELISNSS DALDKIRFES LTDKSKLDGQ PELFIRLVPD KSNKTLSIID SGIGMTKADL VNNLGTIARS
101: GTKEFMEALQ AGADVSMIGQ FGVGFYSAYL VAEKVVVTTK HNDDEQYVWE SQAGGSFTVT RDVDGEPLGR GTKITLFLKD DQLEYLEERR LKDLVKKHSE
201: FISYPIYLWT EKTTEKEISD DEDEDEPKKE NEGEVEEVDE EKEKDGKKKK KIKEVSHEWE LINKQKPIWL RKPEEITKEE YAAFYKSLTN DWEDHLAVKH
301: FSVEGQLEFK AILFVPKRAP FDLFDTRKKL NNIKLYVRRV FIMDNCEELI PEYLSFVKGV VDSDDLPLNI SRETLQQNKI LKVIRKNLVK KCIEMFNEIA
401: ENKEDYTKFY EAFSKNLKLG IHEDSQNRGK IADLLRYHST KSGDEMTSFK DYVTRMKEGQ KDIFYITGES KKAVENSPFL ERLKKRGYEV LYMVDAIDEY
501: AVGQLKEYDG KKLVSATKEG LKLEDETEEE KKKREEKKKS FENLCKTIKE ILGDKVEKVV VSDRIVDSPC CLVTGEYGWT ANMERIMKAQ ALRDSSMSGY
601: MSSKKTMEIN PDNGIMEELR KRAEADKNDK SVKDLVMLLY ETALLTSGFS LDEPNTFAAR IHRMLKLGLS IDEDENVEED GDMPELEEDA AEESKMEEVD

Arabidopsis Description

HSP90-1Heat shock protein 90-1 [Source:UniProtKB/Swiss-Prot;Acc:P27323]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.