Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- vacuole 1
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400003590 | |
| PGSC0003DMT400009924 | |
| PGSC0003DMT400024594 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G21640.1 | PGSC0003DMT400009924 | AT2G36910.1 | 14517332 |
| AT3G21640.1 | PGSC0003DMT400003590 | AT3G28860.1 | 14517332 |
| AT3G21640.1 | PGSC0003DMT400024594 | AT5G52640.1 | 12410806 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g087470.2.1 | Tomato | cytosol | 85.87 | 97.23 |
| CDY34049 | Canola | cytosol | 22.83 | 83.17 |
| VIT_13s0064g00580.t01 | Wine grape | cytosol | 80.43 | 81.1 |
| KRH23877 | Soybean | cytosol, endoplasmic reticulum, nucleus | 76.9 | 76.49 |
| KRH39924 | Soybean | endoplasmic reticulum | 75.82 | 75.41 |
| AT3G21640.1 | Thale cress | cytosol | 72.01 | 72.6 |
| Bra006895.1-P | Field mustard | cytosol | 71.74 | 72.33 |
| CDY29061 | Canola | cytosol | 70.11 | 72.27 |
| CDX78057 | Canola | cytosol | 69.29 | 72.03 |
| Bra012823.1-P | Field mustard | cytosol | 69.84 | 71.99 |
| EES07974 | Sorghum | cytosol | 71.47 | 71.47 |
| CDX73664 | Canola | cytosol | 71.74 | 70.78 |
| GSMUA_Achr6P12690_001 | Banana | cytosol | 70.92 | 69.79 |
| Os12t0145500-01 | Rice | cytosol | 70.11 | 69.73 |
| Os11t0148300-01 | Rice | cytosol | 70.92 | 69.6 |
| Zm00001d004930_P001 | Maize | mitochondrion | 70.65 | 69.52 |
| TraesCS5A01G134500.3 | Wheat | cytosol | 67.93 | 67.75 |
| TraesCS5B01G131200.1 | Wheat | cytosol | 67.93 | 67.57 |
| CDX90622 | Canola | cytosol | 72.28 | 67.34 |
| TraesCS5D01G139000.1 | Wheat | cytosol | 67.39 | 67.03 |
| CDY64639 | Canola | endoplasmic reticulum, extracellular | 46.47 | 63.81 |
| HORVU5Hr1G041060.1 | Barley | cytosol, plastid | 66.85 | 57.88 |
| PGSC0003DMT400083778 | Potato | cytosol | 8.42 | 27.68 |
| PGSC0003DMT400016257 | Potato | nucleus | 9.24 | 18.28 |
| PGSC0003DMT400080935 | Potato | cytosol | 27.17 | 17.24 |
| PGSC0003DMT400051809 | Potato | cytosol | 26.36 | 16.9 |
| PGSC0003DMT400027559 | Potato | cytosol, nucleus, plastid | 25.0 | 15.75 |
| PGSC0003DMT400018490 | Potato | cytosol | 18.21 | 14.05 |
| PGSC0003DMT400053619 | Potato | cytosol | 25.54 | 12.43 |
Protein Annotations
| Gene3D:1.25.40.10 | EntrezGene:102584054 | MapMan:18.12.2 | Gene3D:3.10.50.40 | ncoils:Coil | GO:GO:0000413 |
| GO:GO:0003674 | GO:GO:0003755 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005516 |
| GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0006464 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016853 | GO:GO:0019538 | GO:GO:0048366 |
| InterPro:IPR001179 | InterPro:IPR011990 | InterPro:IPR013026 | InterPro:IPR019734 | UniProt:M1A9A7 | PFAM:PF00254 |
| PFAM:PF13181 | EnsemblPlantsGene:PGSC0003DMG400006860 | PGSC:PGSC0003DMG400006860 | EnsemblPlants:PGSC0003DMT400017681 | InterPro:PPIase_FKBP | InterPro:PPIase_FKBP_dom |
| PFscan:PS50005 | PFscan:PS50059 | PFscan:PS50293 | PANTHER:PTHR43811 | PANTHER:PTHR43811:SF21 | SMART:SM00028 |
| SUPFAM:SSF48452 | SUPFAM:SSF54534 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_repeat | UniParc:UPI000294FE94 |
| RefSeq:XP_006345429.1 | RefSeq:XP_006345430.1 | : | : | : | : |
Description
42 kDa peptidyl-prolyl isomerase [Source:PGSC_GENE;Acc:PGSC0003DMG400006860]
Coordinates
chr1:-:65476926..65484057
Molecular Weight (calculated)
41930.2 Da
IEP (calculated)
6.089
GRAVY (calculated)
-0.586
Length
368 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGVEEEQQL QNSSVDQGGT DEIITEGASV VHGELPQDDA GPPKVDSEVE VLHEKVTKQI IKEGHGQKPS KYATCFVHYR AWAESTQHKF EDTWREQQPL
101: ELVIGKEKKE MTGLAIGVNS MKSGERALFH VGWELAYGKE GSFSFPNVPP TADVLYEVEL IGFDETGEGK TRGDMTVEER IGTADRRKMD GNALFKEEKL
201: EEAMQQYEMA IAYMGDDFMF QLFGKFRDMA LAVKNPCHLN MAACLLKLQR YDEAIAQCSI VLAEEENNVK ALFRRGKARS ILGQTDAARE DFLKARKLAP
301: QDKAITRELN LIAEHEKAVY KKQKELYKGL FGPRPEPKPK SRNWLIVIWQ WLLSLFHMLF RRKTRKDD
101: ELVIGKEKKE MTGLAIGVNS MKSGERALFH VGWELAYGKE GSFSFPNVPP TADVLYEVEL IGFDETGEGK TRGDMTVEER IGTADRRKMD GNALFKEEKL
201: EEAMQQYEMA IAYMGDDFMF QLFGKFRDMA LAVKNPCHLN MAACLLKLQR YDEAIAQCSI VLAEEENNVK ALFRRGKARS ILGQTDAARE DFLKARKLAP
301: QDKAITRELN LIAEHEKAVY KKQKELYKGL FGPRPEPKPK SRNWLIVIWQ WLLSLFHMLF RRKTRKDD
001: MDESLEHQTQ THDQESEIVT EGSAVVHSEP SQEGNVPPKV DSEAEVLDEK VSKQIIKEGH GSKPSKYSTC FLHYRAWTKN SQHKFEDTWH EQQPIELVLG
101: KEKKELAGLA IGVASMKSGE RALVHVGWEL AYGKEGNFSF PNVPPMADLL YEVEVIGFDE TKEGKARSDM TVEERIGAAD RRKMDGNSLF KEEKLEEAMQ
201: QYEMAIAYMG DDFMFQLYGK YQDMALAVKN PCHLNIAACL IKLKRYDEAI GHCNIVLTEE EKNPKALFRR GKAKAELGQM DSARDDFRKA QKYAPDDKAI
301: RRELRALAEQ EKALYQKQKE MYKGIFKGKD EGGAKSKSLF WLIVLWQWFV SLFSRIFRRH RVKAD
101: KEKKELAGLA IGVASMKSGE RALVHVGWEL AYGKEGNFSF PNVPPMADLL YEVEVIGFDE TKEGKARSDM TVEERIGAAD RRKMDGNSLF KEEKLEEAMQ
201: QYEMAIAYMG DDFMFQLYGK YQDMALAVKN PCHLNIAACL IKLKRYDEAI GHCNIVLTEE EKNPKALFRR GKAKAELGQM DSARDDFRKA QKYAPDDKAI
301: RRELRALAEQ EKALYQKQKE MYKGIFKGKD EGGAKSKSLF WLIVLWQWFV SLFSRIFRRH RVKAD
Arabidopsis Description
FKBP42Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178V6X3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.