Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006895.1-P | Field mustard | cytosol | 89.32 | 89.32 |
| CDX78057 | Canola | cytosol | 85.75 | 88.42 |
| CDY34049 | Canola | cytosol | 24.38 | 88.12 |
| CDY29061 | Canola | cytosol | 85.75 | 87.68 |
| CDX73664 | Canola | cytosol | 89.32 | 87.4 |
| Bra012823.1-P | Field mustard | cytosol | 85.21 | 87.11 |
| CDX90622 | Canola | cytosol | 88.22 | 81.52 |
| CDY64639 | Canola | endoplasmic reticulum, extracellular | 57.26 | 77.99 |
| VIT_13s0064g00580.t01 | Wine grape | cytosol | 75.62 | 75.62 |
| KRH23877 | Soybean | cytosol, endoplasmic reticulum, nucleus | 73.7 | 72.7 |
| PGSC0003DMT400017681 | Potato | cytosol | 72.6 | 72.01 |
| KRH39924 | Soybean | endoplasmic reticulum | 72.88 | 71.89 |
| GSMUA_Achr6P12690_001 | Banana | cytosol | 71.51 | 69.79 |
| Solyc01g087470.2.1 | Tomato | cytosol | 61.64 | 69.23 |
| EES07974 | Sorghum | cytosol | 69.32 | 68.75 |
| Zm00001d004930_P001 | Maize | mitochondrion | 68.49 | 66.84 |
| Os12t0145500-01 | Rice | cytosol | 67.12 | 66.22 |
| Os11t0148300-01 | Rice | cytosol | 67.4 | 65.6 |
| TraesCS5A01G134500.3 | Wheat | cytosol | 64.38 | 63.69 |
| TraesCS5B01G131200.1 | Wheat | cytosol | 64.38 | 63.51 |
| TraesCS5D01G139000.1 | Wheat | cytosol | 63.84 | 62.97 |
| HORVU5Hr1G041060.1 | Barley | cytosol, plastid | 64.93 | 55.76 |
| AT5G64350.1 | Thale cress | cytosol, mitochondrion, plastid | 9.32 | 30.36 |
| AT1G58450.1 | Thale cress | cytosol | 13.15 | 29.27 |
| AT3G55520.1 | Thale cress | nucleus | 9.59 | 18.42 |
| AT5G48570.1 | Thale cress | cytosol | 27.67 | 17.47 |
| AT3G25230.2 | Thale cress | cytosol | 26.85 | 17.44 |
| AT3G54010.1 | Thale cress | cytosol | 21.92 | 12.6 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:18.12.2 | PDB:2F4E | PDB:2IF4 | Gene3D:3.10.50.40 | EntrezGene:821718 |
| UniProt:A0A178V6X3 | ProteinID:AEE76533.1 | EMBL:AJ224640 | ArrayExpress:AT3G21640 | EnsemblPlantsGene:AT3G21640 | RefSeq:AT3G21640 |
| TAIR:AT3G21640 | RefSeq:AT3G21640-TAIR-G | EnsemblPlants:AT3G21640.1 | TAIR:AT3G21640.1 | EMBL:AY093009 | Unigene:At.5664 |
| ProteinID:BAB02359.1 | EMBL:BT001192 | ncoils:Coil | GO:GO:0000413 | GO:GO:0003674 | GO:GO:0003755 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005516 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005774 | GO:GO:0005783 | GO:GO:0005886 |
| GO:GO:0006464 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016853 |
| GO:GO:0019538 | GO:GO:0048366 | InterPro:IPR001179 | InterPro:IPR011990 | InterPro:IPR013026 | InterPro:IPR019734 |
| RefSeq:NP_188801.2 | ProteinID:OAP01438.1 | PFAM:PF00254 | PFAM:PF13181 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020094 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| InterPro:PPIase_FKBP | InterPro:PPIase_FKBP_dom | PFscan:PS50005 | PFscan:PS50059 | PFscan:PS50293 | PANTHER:PTHR43811 |
| PANTHER:PTHR43811:SF21 | UniProt:Q9LDC0 | SMART:SM00028 | SUPFAM:SSF48452 | SUPFAM:SSF54534 | TMHMM:TMhelix |
| InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_repeat | Symbol:TWD1 | UniParc:UPI00000A75D3 | : |
Description
FKBP42Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178V6X3]
Coordinates
chr3:-:7618851..7621477
Molecular Weight (calculated)
41807.8 Da
IEP (calculated)
6.596
GRAVY (calculated)
-0.682
Length
365 amino acids
Sequence
(BLAST)
(BLAST)
001: MDESLEHQTQ THDQESEIVT EGSAVVHSEP SQEGNVPPKV DSEAEVLDEK VSKQIIKEGH GSKPSKYSTC FLHYRAWTKN SQHKFEDTWH EQQPIELVLG
101: KEKKELAGLA IGVASMKSGE RALVHVGWEL AYGKEGNFSF PNVPPMADLL YEVEVIGFDE TKEGKARSDM TVEERIGAAD RRKMDGNSLF KEEKLEEAMQ
201: QYEMAIAYMG DDFMFQLYGK YQDMALAVKN PCHLNIAACL IKLKRYDEAI GHCNIVLTEE EKNPKALFRR GKAKAELGQM DSARDDFRKA QKYAPDDKAI
301: RRELRALAEQ EKALYQKQKE MYKGIFKGKD EGGAKSKSLF WLIVLWQWFV SLFSRIFRRH RVKAD
101: KEKKELAGLA IGVASMKSGE RALVHVGWEL AYGKEGNFSF PNVPPMADLL YEVEVIGFDE TKEGKARSDM TVEERIGAAD RRKMDGNSLF KEEKLEEAMQ
201: QYEMAIAYMG DDFMFQLYGK YQDMALAVKN PCHLNIAACL IKLKRYDEAI GHCNIVLTEE EKNPKALFRR GKAKAELGQM DSARDDFRKA QKYAPDDKAI
301: RRELRALAEQ EKALYQKQKE MYKGIFKGKD EGGAKSKSLF WLIVLWQWFV SLFSRIFRRH RVKAD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.