Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_18s0001g08830.t01 | Wine grape | cytosol | 61.59 | 16.83 |
| KRG88759 | Soybean | cytosol | 57.32 | 16.15 |
| PGSC0003DMT400027559 | Potato | cytosol, nucleus, plastid | 57.32 | 16.1 |
| KRH05556 | Soybean | cytosol | 54.88 | 15.44 |
| Solyc04g077660.2.1 | Tomato | cytosol | 54.88 | 15.41 |
| GSMUA_Achr8P04930_001 | Banana | cytosol | 57.93 | 14.96 |
| AT3G25230.2 | Thale cress | cytosol | 50.0 | 14.59 |
| AT3G21640.1 | Thale cress | cytosol | 29.27 | 13.15 |
| AT5G48570.1 | Thale cress | cytosol | 45.73 | 12.98 |
| AT3G54010.1 | Thale cress | cytosol | 26.22 | 6.77 |
| AT3G55520.1 | Thale cress | nucleus | 4.88 | 4.21 |
| AT5G64350.1 | Thale cress | cytosol, mitochondrion, plastid | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | EntrezGene:842214 | ProteinID:AAG50644.1 | ProteinID:AEE33550.1 | ArrayExpress:AT1G58450 |
| EnsemblPlantsGene:AT1G58450 | RefSeq:AT1G58450 | TAIR:AT1G58450 | RefSeq:AT1G58450-TAIR-G | EnsemblPlants:AT1G58450.1 | TAIR:AT1G58450.1 |
| Unigene:At.52259 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0016853 |
| InterPro:IPR011990 | InterPro:IPR013026 | InterPro:IPR019734 | RefSeq:NP_176141.1 | InterPro:PPIase_FKBP | PFscan:PS50005 |
| PFscan:PS50293 | PANTHER:PTHR43811 | PANTHER:PTHR43811:SF15 | UniProt:Q9C650 | SMART:SM00028 | SUPFAM:SSF48452 |
| InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | Symbol:TPR6 | InterPro:TPR_repeat | UniParc:UPI00000483B6 | : |
Description
TPR6Peptidylprolyl isomerase, putative [Source:UniProtKB/TrEMBL;Acc:Q9C650]
Coordinates
chr1:+:21718014..21718916
Molecular Weight (calculated)
18682.4 Da
IEP (calculated)
9.104
GRAVY (calculated)
-0.607
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MNNGEKIEAA NRKKEEGNLL YKTQKYERAA KKYNKAAECI ENGKFEGGDE KQVKALRVSC FLNGAACSLK LKNFLETIVL CSEVLDIEFQ NVKALYRRAQ
101: SYIEVGDLIS AEMDINRALE ADPENREVKS LYKAMKLSKA ESDRRDAKLY ANMFALSKVR THFP
101: SYIEVGDLIS AEMDINRALE ADPENREVKS LYKAMKLSKA ESDRRDAKLY ANMFALSKVR THFP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.