CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plasma membrane 1
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05556	Soybean	cytosol	92.1	91.94
PGSC0003DMT400027559	Potato	cytosol, nucleus, plastid	60.48	60.27
VIT_18s0001g08830.t01	Wine grape	cytosol	61.51	59.67
Solyc04g077660.2.1	Tomato	cytosol	58.59	58.39
AT1G58450.1	Thale cress	cytosol	16.15	57.32
KRH46622	Soybean	cytosol, nucleus	48.28	51.65
KRG99620	Soybean	cytosol	47.77	51.1
GSMUA_Achr8P04930_001	Banana	cytosol	54.64	50.08
KRH42713	Soybean	cytosol	47.77	48.77
KRH66151	Soybean	nucleus	48.63	48.63
KRH07424	Soybean	cytosol	47.94	48.61
KRH58815	Soybean	peroxisome	47.59	48.6
KRH66687	Soybean	cytosol	35.57	38.33
KRH21780	Soybean	cytosol, mitochondrion, plastid	5.67	29.46
KRH62430	Soybean	cytosol	27.66	25.88
KRH75755	Soybean	cytosol, endoplasmic reticulum	27.66	25.88
KRH10589	Soybean	cytosol	5.67	23.57
KRH30990	Soybean	cytosol	7.56	23.4
KRG97894	Soybean	cytosol	7.22	22.34
KRH23877	Soybean	cytosol, endoplasmic reticulum, nucleus	14.09	22.16
KRH39924	Soybean	endoplasmic reticulum	13.92	21.89
KRG95045	Soybean	cytosol	5.15	21.74

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100798382	MapMan:18.12.2	Gene3D:3.10.50.40	ncoils:Coil	EnsemblPlantsGene:GLYMA_U030100
GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005528	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	GO:GO:0061077
UniProt:I1M8V0	InterPro:IPR001179	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	EnsemblPlants:KRG88759
ProteinID:KRG88759	ProteinID:KRG88759.1	PFAM:PF00254	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50005
PFscan:PS50059	PFscan:PS50293	PANTHER:PTHR10516	PANTHER:PTHR10516:SF393	SMART:SM00028	SUPFAM:SSF48452
SUPFAM:SSF54534	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI000233B842	SEG:seg

Description

hypothetical protein

Coordinates

chrscaffold_28:+:227970..234840

Molecular Weight (calculated)

64551.1 Da

IEP (calculated)

4.664

GRAVY (calculated)

-0.366

Length

582 amino acids

Sequence
(BLAST)

001: MVVVLSDQDE FDEEPGEVVD SAPPQKVGEE RQFSGFKKKL LKRGQGWEFP NFDDVVTVRC VGIGTLLDGT TFDYTRERDR PRTFALGKDD VAAGLDRGIC
101: TMKKGEVALF TLPGDGGDGD FTRDSDGSVV RFEVELVSWI TVVDVCKDGG VVKKIMEKGS GNERPGDLDE VLVKYQVVLD DGTVVVETPE GGVEFHVKDG
201: HLFPILPKVI MTMTRGEKAE LIVQPQYAFG EKGREAGSGL CSIPPNSVLH VNIELVSFKP VINVTGDSKV IKKILKEGEG VFTANEGANV TVRFTAMLED
301: GTVFEKRGIG ETQPLEFITD EEQVITGLDR AVATMKKGER AIVSIHPDYA FGNVEVRRDL AIVPPGATVV YDVEMMDFIK EKAPWELNSK EKIEVAGRMK
401: EEGNVLFKGG NYQRAGKKYE KAADFVEEDG SFGDDEQKQA QTLRVSCWLN GAACSLKLND FPGAIKLCSQ VLDVEFCNVK AFYRRAQAYI ETGDYLLADV
501: DIKKALVVDP QNREVKVIQK KLKQLQADSD KKDAKLYENM FARKTKDSPM AIKRLKVEKD ERENEEVARM EIDEVADSPV IQ

Best Arabidopsis Sequence Match ( AT1G58450.1 )
(BLAST)

001: MNNGEKIEAA NRKKEEGNLL YKTQKYERAA KKYNKAAECI ENGKFEGGDE KQVKALRVSC FLNGAACSLK LKNFLETIVL CSEVLDIEFQ NVKALYRRAQ
101: SYIEVGDLIS AEMDINRALE ADPENREVKS LYKAMKLSKA ESDRRDAKLY ANMFALSKVR THFP

Arabidopsis Description

TPR6Peptidylprolyl isomerase, putative [Source:UniProtKB/TrEMBL;Acc:Q9C650]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.