CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
vacuole 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH42483
KRH58580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55520.1	KRH42483	AT2G01950.1	19000166
AT3G55520.1	KRH58580	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97894	Soybean	cytosol	98.4	98.4
VIT_13s0019g01900.t01	Wine grape	cytosol	84.04	84.04
Solyc04g011620.2.1	Tomato	nucleus	82.98	83.87
PGSC0003DMT400016257	Potato	nucleus	82.98	83.87
Os05t0458100-01	Rice	nucleus	81.38	82.26
GSMUA_AchrUn_...	Banana	nucleus	81.91	81.91
EES19645	Sorghum	nucleus	79.79	80.65
Os01t0844300-01	Rice	nucleus	76.6	77.84
CDY41214	Canola	nucleus	78.19	77.37
AT3G55520.1	Thale cress	nucleus	78.19	77.37
Bra007173.1-P	Field mustard	nucleus	77.66	76.84
CDY40236	Canola	nucleus	77.66	76.84
TraesCS1D01G282500.1	Wheat	nucleus	77.66	72.28
TraesCS1B01G292400.1	Wheat	nucleus	77.66	72.28
Zm00001d038368_P002	Maize	extracellular	81.38	60.96
HORVU1Hr1G072570.7	Barley	cytosol, nucleus, plastid	79.26	54.18
KRH21780	Soybean	cytosol, mitochondrion, plastid	22.87	38.39
KRH10589	Soybean	cytosol	22.87	30.71
KRG95045	Soybean	cytosol	18.62	25.36
KRG99620	Soybean	cytosol	34.04	11.76
KRH46622	Soybean	cytosol, nucleus	33.51	11.58
KRH07424	Soybean	cytosol	35.11	11.5
KRH42713	Soybean	cytosol	34.04	11.23
KRH58815	Soybean	peroxisome	33.51	11.05
KRH66151	Soybean	nucleus	34.04	11.0
KRH23877	Soybean	cytosol, endoplasmic reticulum, nucleus	19.68	10.0
KRH39924	Soybean	endoplasmic reticulum	19.15	9.73
KRH66687	Soybean	cytosol	27.13	9.44
KRG88759	Soybean	cytosol	23.4	7.56
KRH05556	Soybean	cytosol	23.4	7.55
KRH62430	Soybean	cytosol	20.74	6.27
KRH75755	Soybean	cytosol, endoplasmic reticulum	20.21	6.11

Protein Annotations

MapMan:18.12.2	Gene3D:3.10.50.40	EMBL:ACUP02007116	ncoils:Coil	EnsemblPlantsGene:GLYMA_11G220100	GO:GO:0000413
GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005488	GO:GO:0005528	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	GO:GO:0061077	UniProt:I1LMG3	InterPro:IPR001179
EnsemblPlants:KRH30990	ProteinID:KRH30990	ProteinID:KRH30990.1	PFAM:PF00254	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom
PFscan:PS50059	PANTHER:PTHR10516	PANTHER:PTHR10516:SF326	SUPFAM:SSF54534	UniParc:UPI000233D134	SEG:seg

Description

hypothetical protein

Coordinates

chr11:+:31547197..31550103

Molecular Weight (calculated)

20115.0 Da

IEP (calculated)

8.195

GRAVY (calculated)

-0.494

Length

188 amino acids

Sequence
(BLAST)

001: MGDAIDLSGD GGVIKTIVRK SKADAVGPTE NFPLVDVHYE GTLADTGEVF DTTHEDNTIF SFEIGKGSVI KAWEIAVKTM KVGEVAKITC KPEYAYGSAG
101: SPPDIPPDAQ LVFEVELVAC RPRKGSSLGS VSEERARLDE LKKQRELAAA AKEEEKKKRE EAKAVAAARV QAKLEAKKGQ GKGKGKAK

Best Arabidopsis Sequence Match ( AT3G55520.2 )
(BLAST)

001: MGDAIDLSGD GGVLKKIVRS AKPDAISPSD DLPVVDVHYE GILAEDEKVF DTTREDNLVF SFELGTGSVI RSWDIALKTM KVGEVAKITC KPEYAYGRAG
101: SPPDIPPDAT LIFEVELVAC RPRKGASVGS VSEERARLED LKKQREIAAA AKEDDKKKRE EAKAAAAARI QAKLDAKKGP GKGKGKGKAK

Arabidopsis Description

FKBP20-1Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178VDC9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.