Factsheet for Zm00001d038368_P002

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000055_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55520.1	Zm00001d000055_P001	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19645	Sorghum	nucleus	72.11	97.31
Os05t0458100-01	Rice	nucleus	70.92	95.7
TraesCS1D01G282500.1	Wheat	nucleus	69.72	86.63
TraesCS1B01G292400.1	Wheat	nucleus	69.72	86.63
GSMUA_AchrUn_...	Banana	nucleus	62.55	83.51
PGSC0003DMT400016257	Potato	nucleus	61.75	83.33
Solyc04g011620.2.1	Tomato	nucleus	61.75	83.33
VIT_13s0019g01900.t01	Wine grape	cytosol	62.15	82.98
KRG97894	Soybean	cytosol	62.15	82.98
KRH30990	Soybean	cytosol	60.96	81.38
AT3G55520.1	Thale cress	nucleus	58.17	76.84
Bra007173.1-P	Field mustard	nucleus	57.77	76.32
CDY40236	Canola	nucleus	57.77	76.32
CDY41214	Canola	nucleus	56.97	75.26
HORVU1Hr1G072570.7	Barley	cytosol, nucleus, plastid	74.9	68.36
Zm00001d018134_P001	Maize	mitochondrion	17.13	38.39
Zm00001d031569_P001	Maize	plasma membrane	27.89	12.07
Zm00001d004243_P001	Maize	cytosol	26.69	11.39
Zm00001d004930_P001	Maize	mitochondrion	15.14	10.16
Zm00001d016512_P002	Maize	cytosol	28.29	8.9
Zm00001d047426_P003	Maize	cytosol	16.73	6.4
Zm00001d029272_P002	Maize	cytosol	4.78	1.86

Protein Annotations

EntrezGene:100280699	MapMan:18.12.2	Gene3D:3.10.50.40	UniProt:A0A1D6M5T1	ProteinID:AQK86447.1	ncoils:Coil
GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	InterPro:IPR001179	PFAM:PF00254
InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50059	PANTHER:PTHR10516	PANTHER:PTHR10516:SF326	SUPFAM:SSF54534
UniParc:UPI00084341FE	EnsemblPlantsGene:Zm00001d038368	EnsemblPlants:Zm00001d038368_P002	EnsemblPlants:Zm00001d038368_T002	SEG:seg	:

Description

Peptidyl-prolyl cis-trans isomerase

Coordinates

chr6:-:155638267..155640737

Molecular Weight (calculated)

27046.6 Da

IEP (calculated)

9.131

GRAVY (calculated)

-0.344

Length

251 amino acids

Sequence
(BLAST)

001: MEVARIAGGI AAMTPWMEDF SRMAGVRRAR WRLMEATAPW VEAAAAAAGR LRGGCLRVAE RSTKVMEEMI DLTGDGGVLK TVVRKAKDDA IAPSESLPLV
101: DVHYEGTLAE TGEVFDTTHE DNSIFSFEIG QGAVIKAWDI ALRTMKVGEV AKITCKSEYA YGAAGSPPEI PPNATLIFEV ELVACRPRKG SSLGSVSDEK
201: ARLEELKKQR ELAAATKEEE KKKREEAKAA AAARVQAKLD AKKGKGKGKG K

Best Arabidopsis Sequence Match ( AT3G55520.2 )
(BLAST)

001: MGDAIDLSGD GGVLKKIVRS AKPDAISPSD DLPVVDVHYE GILAEDEKVF DTTREDNLVF SFELGTGSVI RSWDIALKTM KVGEVAKITC KPEYAYGRAG
101: SPPDIPPDAT LIFEVELVAC RPRKGASVGS VSEERARLED LKKQREIAAA AKEDDKKKRE EAKAAAAARI QAKLDAKKGP GKGKGKGKAK

Arabidopsis Description

FKBP20-1Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178VDC9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.