Factsheet for VIT_13s0019g01900.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, vacuole
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	vacuole
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g06410.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55520.1	VIT_01s0011g06410.t01	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97894	Soybean	cytosol	85.64	85.64
GSMUA_AchrUn_...	Banana	nucleus	84.04	84.04
KRH30990	Soybean	cytosol	84.04	84.04
PGSC0003DMT400016257	Potato	nucleus	82.45	83.33
Solyc04g011620.2.1	Tomato	nucleus	81.91	82.8
EES19645	Sorghum	nucleus	81.91	82.8
Os05t0458100-01	Rice	nucleus	81.91	82.8
AT3G55520.1	Thale cress	nucleus	80.85	80.0
Os01t0844300-01	Rice	nucleus	78.72	80.0
CDY41214	Canola	nucleus	79.79	78.95
Bra007173.1-P	Field mustard	nucleus	78.72	77.89
CDY40236	Canola	nucleus	78.72	77.89
TraesCS1D01G282500.1	Wheat	nucleus	80.85	75.25
TraesCS1B01G292400.1	Wheat	nucleus	79.79	74.26
Zm00001d038368_P002	Maize	extracellular	82.98	62.15
HORVU1Hr1G072570.7	Barley	cytosol, nucleus, plastid	81.38	55.64
VIT_03s0017g01060.t01	Wine grape	cytosol, mitochondrion, plastid	20.74	34.82
VIT_00s0260g00070.t01	Wine grape	cytosol	10.64	19.61
VIT_00s0769g00010.t01	Wine grape	peroxisome	36.17	11.91
VIT_08s0040g00790.t01	Wine grape	cytosol	26.6	10.5
VIT_13s0064g00580.t01	Wine grape	cytosol	18.09	9.32
VIT_08s0007g01460.t01	Wine grape	nucleus	25.0	7.58
VIT_18s0001g08830.t01	Wine grape	cytosol	23.94	7.5
VIT_00s0958g00020.t01	Wine grape	cytosol, peroxisome	7.45	4.09

Protein Annotations

EntrezGene:100241006	wikigene:100241006	MapMan:18.12.2	Gene3D:3.10.50.40	EMBL:AM458632	ProteinID:CAN67910
ProteinID:CAN67910.1	ProteinID:CBI31653	ProteinID:CBI31653.3	ncoils:Coil	UniProt:D7TLR6	EMBL:FN595998
GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005488	GO:GO:0005528
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	GO:GO:0061077	InterPro:IPR001179
EntrezGene:LOC100241006	wikigene:LOC100241006	PFAM:PF00254	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50059
PANTHER:PTHR10516	PANTHER:PTHR10516:SF326	SUPFAM:SSF54534	TIGR:TC53304	UniParc:UPI00015C9875	ArrayExpress:VIT_13s0019g01900
EnsemblPlantsGene:VIT_13s0019g01900	EnsemblPlants:VIT_13s0019g01900.t01	unigene:Vvi.7502	RefSeq:XP_002283206	RefSeq:XP_002283206.1	RefSeq:XP_003633475
RefSeq:XP_003633475.1	RefSeq:XP_010658544.1	RefSeq:XP_019080106.1	SEG:seg	:	:

Description

Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:D7TLR6]

Coordinates

chr13:+:3234738..3243152

Molecular Weight (calculated)

20072.0 Da

IEP (calculated)

8.196

GRAVY (calculated)

-0.486

Length

188 amino acids

Sequence
(BLAST)

001: MGDAIDLTGD GGVLKTIIKQ AKPDALTPTE NLPLVDVHYE GTLAETGGVF DTTHEDNTVF SFELGKGTVI KAWDIALKTM KVGEVAKITC KPEYAYGAAG
101: SPPDIPADAT LVFEVELVAC RPRKGSSISS VSDERARLEE LKKQREMAAA TKEEEKKRRE EAKAAAAARV QAKLDAKKGQ GKGKGKGK

Best Arabidopsis Sequence Match ( AT3G55520.2 )
(BLAST)

001: MGDAIDLSGD GGVLKKIVRS AKPDAISPSD DLPVVDVHYE GILAEDEKVF DTTREDNLVF SFELGTGSVI RSWDIALKTM KVGEVAKITC KPEYAYGRAG
101: SPPDIPPDAT LIFEVELVAC RPRKGASVGS VSEERARLED LKKQREIAAA AKEDDKKKRE EAKAAAAARI QAKLDAKKGP GKGKGKGKAK

Arabidopsis Description

FKBP20-1Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178VDC9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.