Factsheet for VIT_08s0007g01460.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 2
nucleus 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0080g00970.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54010.1	VIT_06s0080g00970.t01	AT5G22290.1	16803883

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH75755	Soybean	cytosol, endoplasmic reticulum	77.58	77.33
KRH62430	Soybean	cytosol	77.26	77.01
Solyc11g011420.1.1	Tomato	cytosol, plastid	70.65	75.0
AT3G54010.1	Thale cress	cytosol	71.45	69.76
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus	70.16	69.71
CDX76177	Canola	cytosol	71.13	69.67
TraesCS1B01G192700.1	Wheat	cytosol, mitochondrion	67.74	69.19
TraesCS1A01G184600.1	Wheat	cytosol	69.19	68.75
Bra014849.1-P	Field mustard	cytosol	71.13	68.69
TraesCS1D01G192100.3	Wheat	cytosol	69.03	68.59
CDY13167	Canola	cytosol	69.84	67.45
EER94808	Sorghum	cytosol	68.39	67.3
CDY07563	Canola	cytosol	69.68	67.29
Bra003166.1-P	Field mustard	cytosol	70.0	67.18
Os03t0367000-01	Rice	plasma membrane	68.39	67.09
CDX67584	Canola	cytosol	69.68	66.56
Zm00001d047426_P003	Maize	cytosol	68.71	64.94
HORVU4Hr1G042800.9	Barley	cytosol	64.52	60.24
VIT_08s0040g00790.t01	Wine grape	cytosol	23.87	31.09
VIT_00s0769g00010.t01	Wine grape	peroxisome	28.06	30.47
VIT_00s0260g00070.t01	Wine grape	cytosol	5.0	30.39
VIT_03s0017g01060.t01	Wine grape	cytosol, mitochondrion, plastid	5.32	29.46
VIT_00s0958g00020.t01	Wine grape	cytosol, peroxisome	16.13	29.24
VIT_18s0001g08830.t01	Wine grape	cytosol	24.84	25.67
VIT_13s0019g01900.t01	Wine grape	cytosol	7.58	25.0
VIT_13s0064g00580.t01	Wine grape	cytosol	14.52	24.66

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100249394	wikigene:100249394	MapMan:18.12.2	Gene3D:3.10.50.40	EMBL:AM468683
ProteinID:CAN72637	ProteinID:CAN72637.1	ProteinID:CBI30463	ProteinID:CBI30463.3	UniProt:D7THE7	EMBL:FN595991
GO:GO:0000003	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005528	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005829	GO:GO:0006464	GO:GO:0006629	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009719	GO:GO:0009735	GO:GO:0009790
GO:GO:0009791	GO:GO:0009793	GO:GO:0009826	GO:GO:0009880	GO:GO:0009987	GO:GO:0016043
GO:GO:0016049	GO:GO:0016853	GO:GO:0019538	GO:GO:0030010	GO:GO:0030154	GO:GO:0040007
GO:GO:0042761	GO:GO:0048364	GO:GO:0048527	GO:GO:0061077	GO:GO:0099402	InterPro:IPR001179
InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	EntrezGene:LOC100249394	wikigene:LOC100249394	InterPro:PAS1
PFAM:PF00254	PFAM:PF07719	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50005	PFscan:PS50059
PFscan:PS50293	PANTHER:PTHR10516	PANTHER:PTHR10516:SF268	SMART:SM00028	SUPFAM:SSF48452	SUPFAM:SSF54534
InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_2	InterPro:TPR_repeat	UniParc:UPI0001983C98	ArrayExpress:VIT_08s0007g01460
EnsemblPlantsGene:VIT_08s0007g01460	EnsemblPlants:VIT_08s0007g01460.t01	unigene:Vvi.22330	RefSeq:XP_002273173	RefSeq:XP_002273173.1	RefSeq:XP_010654225.1
SEG:seg	:	:	:	:	:

Description

Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:D7THE7]

Coordinates

chr8:+:15530516..15560058

Molecular Weight (calculated)

69604.7 Da

IEP (calculated)

5.335

GRAVY (calculated)

-0.511

Length

620 amino acids

Sequence
(BLAST)

001: MTVHEDAEQE PVPQKKKPLS EAEKRKKKIV PGSLMKAVIR PGGGDSTPSD GDQVIYHCTV RTLDGVVVES TRSECGGKGT PIRHVLGKSK MILGLLEGMP
101: TMLKGEVAML KMKAELHYGE ANCPLMVPDN FPKDDELHFE IEMLDFFKVK VISDDLGVLK KVINEGQGWE SPREPYEVKA WISAKTGEGK EILSHTKGEP
201: YFFTFGKSEV PKGLEMGTGT MTRGEKAVLY VTNQYITQSP LMPIIEGVEE VLFEVELVHF IQVRDMLGDG RLIKRRIHDG RGDFPMDCPL HDSLLRVHYK
301: GMLLNEEKTV FYNTRVDNNG QPLEFGSGEG LVPEGLEMCV RLMLPGEIAL VTCPPDYAYD KFPRPANVPE GAHVQWEIEL LGFEMPKDWT GLNFEAIMDE
401: ADKIRGTGNR LFKEGKFELA KAKYEKVLRE FNHVNPQDDE EGKVFLNARN SLHLNVAACY LKMGECRKSI EACNKVLDAS PAHVKALYRR GMAYMSAGDF
501: EEARNDFKMM MSIDKSCEPD ATAALVKLKQ KEQEVERKAR SQFKGLFDKK PGDIAEAGVD DRGDKRLGEN EKNDDKEDSD GDKEFQEAED APPPMGFLSH
601: LWPTGRRFFT ALGLDRCSIL

Best Arabidopsis Sequence Match ( AT3G54010.1 )
(BLAST)

001: MAVGDQTEQN YLPKKKKSET EDDKRRKKIV PGSLLKAVVR PGGGDSSPVD GDQVIYHCTV RTLDGVVVES TRSESGGRGV PIRDVLGNSK MILGLLEGIP
101: TMHKGEIAMF KMKPEMHYAE IDCPVSAPEN FPKDDELHFE IELLDFSKAK IASDDLGVIK KILNEGEGWE SPREPYEVKA RISAKSGDGH VIFSHTEEPY
201: FFTFGKSEVP KGLEIGIGTM ARKEKAVIYV RKQYLTESPL LHIDQDLEEV HFEVELVHFI QVRDMLGDGR LIKRRIRDGR GEFPMDCPLQ DSRLSVHYKG
301: MLLNEEKTVF YDSKIDNNDQ PLEFSSGEGL VPEGFEMCTR LMLPGEIALV TCPPDYAYDK FPRPPGVSEG AHVQWEIELL GFETPRDWTG LNFQSIMDEA
401: DKIRSTGNRL FKEGKFELAK AKYEKVLREF NHVNPQDEDE GKIFGDTRNM LHLNVAACLL KMGEWRKSIE TCNKVLEAKP GHVKGLYRRG MAYIAGGEYD
501: DARNDFNMMI KVDKSSEADA TAALLKLKQK EQEAESKARK QFKGLFDKRP GEITEVGSEI REESKTIEEV DETKDNDDDE TLEEEGATTV STERKRKWSE
601: KAWPFLKNVM LQIGIQLGVV LIGILIFQFV SAKFT

Arabidopsis Description

PAS1Peptidyl-prolyl cis-trans isomerase PASTICCINO1 [Source:UniProtKB/Swiss-Prot;Acc:Q7DMA9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.