Factsheet for Bra014849.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
nucleus 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002403.1-P
Bra006619.1-P
Bra020182.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54010.1	Bra002403.1-P	AT5G22290.1	16803883
AT3G54010.1	Bra006619.1-P	AT5G22290.1	16803883
AT3G54010.1	Bra020182.1-P	AT5G22290.1	16803883

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76177	Canola	cytosol	97.98	99.37
Bra003166.1-P	Field mustard	cytosol	91.9	91.33
AT3G54010.1	Thale cress	cytosol	89.1	90.08
KRH62430	Soybean	cytosol	69.0	71.22
VIT_08s0007g01460.t01	Wine grape	nucleus	68.69	71.13
KRH75755	Soybean	cytosol, endoplasmic reticulum	68.38	70.58
Solyc11g011420.1.1	Tomato	cytosol, plastid	63.71	70.03
TraesCS1B01G192700.1	Wheat	cytosol, mitochondrion	61.99	65.57
TraesCS1D01G192100.3	Wheat	cytosol	63.55	65.38
TraesCS1A01G184600.1	Wheat	cytosol	63.4	65.22
Os03t0367000-01	Rice	plasma membrane	63.71	64.72
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus	62.31	64.1
EER94808	Sorghum	cytosol	62.62	63.81
Zm00001d047426_P003	Maize	cytosol	62.93	61.59
HORVU4Hr1G042800.9	Barley	cytosol	60.9	58.89
Bra037775.1-P	Field mustard	cytosol, mitochondrion, plastid	5.14	29.46
Bra024287.1-P	Field mustard	cytosol, mitochondrion, plastid	5.14	29.46
Bra013224.1-P	Field mustard	cytosol	25.7	29.1
Bra037477.1-P	Field mustard	cytosol	25.39	28.45
Bra007173.1-P	Field mustard	nucleus	6.85	23.16
Bra006895.1-P	Field mustard	cytosol	12.15	21.37
Bra012823.1-P	Field mustard	cytosol	11.53	20.73

Protein Annotations

Gene3D:1.25.40.10	MapMan:18.12.2	Gene3D:3.10.50.40	EnsemblPlantsGene:Bra014849	EnsemblPlants:Bra014849.1	EnsemblPlants:Bra014849.1-P
ncoils:Coil	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0006464	GO:GO:0006629	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016853
GO:GO:0019538	GO:GO:0030154	GO:GO:0042761	GO:GO:0099402	InterPro:IPR001179	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR019734	UniProt:M4DEC8	InterPro:PAS1	PFAM:PF00254	PFAM:PF13174
InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50005	PFscan:PS50059	PFscan:PS50293	PANTHER:PTHR10516
PANTHER:PTHR10516:SF268	SMART:SM00028	SUPFAM:SSF48452	SUPFAM:SSF54534	TMHMM:TMhelix	InterPro:TPR-contain_dom
InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI00025450AF	SEG:seg	:	:

Description

AT3G54010 (E=2e-237) PAS1, DEI1 | PAS1 (PASTICCINO 1); FK506 binding / binding / peptidyl-prolyl cis-trans isomerase

Coordinates

chrA04:-:3585399..3589424

Molecular Weight (calculated)

72901.6 Da

IEP (calculated)

5.808

GRAVY (calculated)

-0.553

Length

642 amino acids

Sequence
(BLAST)

001: MDATEQNHLP KKKKSETEDD KRRKKIVPGS LLKALVRPGG GESSPVDGDQ VIYHCTVRTL DGVVVESTRS ECGGRGLPIR DVLGKSKMIL GLLEGIPTMH
101: KGEIAMFKMK PEMHYAEKDC PVLAPGNFPK DDELHFEIEL LDFAKAKAIS HHELLRYSIA SDDLGVIKKI LNEGEGWESP REPYEVKARI SAISGDGKVI
201: LSHKEEPYFF TFGKSEVPKG LEIGIGTMAR KEKAVIYVRK QYLTESPLMH IAQDFEEVHF EVELVHFIQV RDMLGDGRLI KRRVRDGRGE FPMDCPLQDS
301: RLSVHYKGML LNEEKTVFYD SRIENNDHPL EFSSGEGLVP EGFEMCTRLM LPGEIALVTC PPDYADDKFP RPPGVPEGAH VQWEIELLGF ETPKDWTGLD
401: FQSIMNEAEN IRNTGNRLFK EGKFELAKAK YEKVLREFNH VNPQDDEEGK VFGDARNMLH LNVAACLLKM GEWRKSLETC NKVLEAKPGH VKGLYRRGMA
501: YMAGGEYEDA RNDFNMMIKV DKSSEADATA ALFKLKQKEQ EAESKARKQF KGLFDKKPGE ITEVGSEIRE ETKTIEEIDE TKDNDEIEEE ERTRTVVSME
601: RKRKWSEKAW PIMKNVIVQI GIQLGVALLG VLIFQYVSSR FT

Best Arabidopsis Sequence Match ( AT3G54010.1 )
(BLAST)

001: MAVGDQTEQN YLPKKKKSET EDDKRRKKIV PGSLLKAVVR PGGGDSSPVD GDQVIYHCTV RTLDGVVVES TRSESGGRGV PIRDVLGNSK MILGLLEGIP
101: TMHKGEIAMF KMKPEMHYAE IDCPVSAPEN FPKDDELHFE IELLDFSKAK IASDDLGVIK KILNEGEGWE SPREPYEVKA RISAKSGDGH VIFSHTEEPY
201: FFTFGKSEVP KGLEIGIGTM ARKEKAVIYV RKQYLTESPL LHIDQDLEEV HFEVELVHFI QVRDMLGDGR LIKRRIRDGR GEFPMDCPLQ DSRLSVHYKG
301: MLLNEEKTVF YDSKIDNNDQ PLEFSSGEGL VPEGFEMCTR LMLPGEIALV TCPPDYAYDK FPRPPGVSEG AHVQWEIELL GFETPRDWTG LNFQSIMDEA
401: DKIRSTGNRL FKEGKFELAK AKYEKVLREF NHVNPQDEDE GKIFGDTRNM LHLNVAACLL KMGEWRKSIE TCNKVLEAKP GHVKGLYRRG MAYIAGGEYD
501: DARNDFNMMI KVDKSSEADA TAALLKLKQK EQEAESKARK QFKGLFDKRP GEITEVGSEI REESKTIEEV DETKDNDDDE TLEEEGATTV STERKRKWSE
601: KAWPFLKNVM LQIGIQLGVV LIGILIFQFV SAKFT

Arabidopsis Description

PAS1Peptidyl-prolyl cis-trans isomerase PASTICCINO1 [Source:UniProtKB/Swiss-Prot;Acc:Q7DMA9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.