Factsheet for TraesCS1B01G192700.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

mitochondrion 4
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G192100.3	Wheat	cytosol	98.35	95.67
TraesCS1A01G184600.1	Wheat	cytosol	98.19	95.51
EER94808	Sorghum	cytosol	86.16	83.02
Os03t0367000-01	Rice	plasma membrane	85.01	81.65
Zm00001d047426_P003	Maize	cytosol	85.67	79.27
HORVU4Hr1G042800.9	Barley	cytosol	84.18	76.96
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus	70.18	68.27
VIT_08s0007g01460.t01	Wine grape	nucleus	69.19	67.74
KRH62430	Soybean	cytosol	69.19	67.52
KRH75755	Soybean	cytosol, endoplasmic reticulum	68.86	67.2
Solyc11g011420.1.1	Tomato	cytosol, plastid	63.76	66.27
CDX76177	Canola	cytosol	65.4	62.72
AT3G54010.1	Thale cress	cytosol	65.24	62.36
Bra014849.1-P	Field mustard	cytosol	65.57	61.99
CDY13167	Canola	cytosol	65.07	61.53
CDY07563	Canola	cytosol	64.42	60.9
Bra003166.1-P	Field mustard	cytosol	63.92	60.06
CDX67584	Canola	cytosol	63.59	59.48
TraesCS7B01G153100.1	Wheat	golgi	27.02	29.34
TraesCS2B01G294500.1	Wheat	cytosol	26.03	26.92
TraesCS2B01G063900.1	Wheat	cytosol	27.18	25.86
TraesCS1B01G292400.1	Wheat	nucleus	7.74	23.27
TraesCS5B01G131200.1	Wheat	cytosol	13.84	22.7
TraesCS6B01G344100.1	Wheat	plastid	5.11	15.9

Protein Annotations

Gene3D:1.25.40.10	MapMan:18.12.2	Gene3D:3.10.50.40	Gene3D:3.30.1670.20	ncoils:Coil	GO:GO:0000003
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005829	GO:GO:0006629	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009719	GO:GO:0009735	GO:GO:0009790
GO:GO:0009791	GO:GO:0009793	GO:GO:0009826	GO:GO:0009880	GO:GO:0009987	GO:GO:0016043
GO:GO:0016049	GO:GO:0030010	GO:GO:0030154	GO:GO:0040007	GO:GO:0042761	GO:GO:0048364
GO:GO:0048527	GO:GO:0099402	InterPro:IPR001179	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734
InterPro:PAS1	PFAM:PF00254	PFAM:PF13174	PFAM:PF13181	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom
PFscan:PS50005	PFscan:PS50059	PFscan:PS50293	PANTHER:PTHR10516	PANTHER:PTHR10516:SF268	SMART:SM00028
SUPFAM:SSF48452	SUPFAM:SSF54534	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	EnsemblPlantsGene:TraesCS1B01G192700
EnsemblPlants:TraesCS1B01G192700.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1B:-:345303314..345325533

Molecular Weight (calculated)

67968.5 Da

IEP (calculated)

5.525

GRAVY (calculated)

-0.480

Length

607 amino acids

Sequence
(BLAST)

001: MPWLCCRREK LTPGSLMKAV IRSGRGDATP ADGDQVILHC TIRTMEGIVV NSTRREHGGK GIPLRFVLGK SKMILGFAEG FPTMLKGEIA MFKMEPKIHY
101: AEDDCPVTPP DGFPKDDELQ FEVEMLDFFK AKVVTEDLGV VKKIVDEGKG WETPREPYEV TARITARTAD GKEILPSKEV PYFFTLGKSE APKGLEMGIG
201: TMARKEKATI YVTSTYLTES SVMPQLEGLE EVHFEVELVQ FTQVRDMLGD GRLIKRRVVD GSGEFPMDCP LHDSLLRVHY KGMLLDEPKS VFYDTQIDND
301: GEPLEFCSGE GLVPEGFEMC VRLMLPGEKS IVTCPPDFAY DKFPRPANVP EGAHVRWEIE LLGFEVPKDW TGLTFKEIME EADKIKNTGN RLFKEGKFEL
401: AKAKYEKLLR EYNHVHPQDD EEGKIFANSR SSLHLNVAAC YQKMGEYRKS IEACNKVLDA NPVHVKALYR RGMSYMLGGD FDDAKNDFEK MVTVEKSSEP
501: DATAALVKLK QKEQEIEKKA RKQFKGLFDK KPGEISEVGV ESKNGGDTAG SGEAVTSRDR DGSGKSSLPS AESDHAFDEE RPGLIGRIWP SARRIFSSLG
601: LNRCTIL

Best Arabidopsis Sequence Match ( AT3G54010.1 )
(BLAST)

001: MAVGDQTEQN YLPKKKKSET EDDKRRKKIV PGSLLKAVVR PGGGDSSPVD GDQVIYHCTV RTLDGVVVES TRSESGGRGV PIRDVLGNSK MILGLLEGIP
101: TMHKGEIAMF KMKPEMHYAE IDCPVSAPEN FPKDDELHFE IELLDFSKAK IASDDLGVIK KILNEGEGWE SPREPYEVKA RISAKSGDGH VIFSHTEEPY
201: FFTFGKSEVP KGLEIGIGTM ARKEKAVIYV RKQYLTESPL LHIDQDLEEV HFEVELVHFI QVRDMLGDGR LIKRRIRDGR GEFPMDCPLQ DSRLSVHYKG
301: MLLNEEKTVF YDSKIDNNDQ PLEFSSGEGL VPEGFEMCTR LMLPGEIALV TCPPDYAYDK FPRPPGVSEG AHVQWEIELL GFETPRDWTG LNFQSIMDEA
401: DKIRSTGNRL FKEGKFELAK AKYEKVLREF NHVNPQDEDE GKIFGDTRNM LHLNVAACLL KMGEWRKSIE TCNKVLEAKP GHVKGLYRRG MAYIAGGEYD
501: DARNDFNMMI KVDKSSEADA TAALLKLKQK EQEAESKARK QFKGLFDKRP GEITEVGSEI REESKTIEEV DETKDNDDDE TLEEEGATTV STERKRKWSE
601: KAWPFLKNVM LQIGIQLGVV LIGILIFQFV SAKFT

Arabidopsis Description

PAS1Peptidyl-prolyl cis-trans isomerase PASTICCINO1 [Source:UniProtKB/Swiss-Prot;Acc:Q7DMA9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.