Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G099400.1 | |
| TraesCS3B01G115800.1 | |
| TraesCS3D01G099700.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G55520.1 | TraesCS3A01G099400.1 | AT2G01950.1 | 19000166 |
| AT3G55520.1 | TraesCS3B01G115800.1 | AT2G01950.1 | 19000166 |
| AT3G55520.1 | TraesCS3D01G099700.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G282500.1 | Wheat | nucleus | 98.02 | 98.02 |
| Os05t0458100-01 | Rice | nucleus | 86.63 | 94.09 |
| EES19645 | Sorghum | nucleus | 84.16 | 91.4 |
| VIT_13s0019g01900.t01 | Wine grape | cytosol | 74.26 | 79.79 |
| KRG97894 | Soybean | cytosol | 73.76 | 79.26 |
| Solyc04g011620.2.1 | Tomato | nucleus | 72.77 | 79.03 |
| PGSC0003DMT400016257 | Potato | nucleus | 72.77 | 79.03 |
| GSMUA_AchrUn_... | Banana | nucleus | 73.27 | 78.72 |
| KRH30990 | Soybean | cytosol | 72.28 | 77.66 |
| AT3G55520.1 | Thale cress | nucleus | 70.79 | 75.26 |
| Bra007173.1-P | Field mustard | nucleus | 70.3 | 74.74 |
| CDY40236 | Canola | nucleus | 70.3 | 74.74 |
| CDY41214 | Canola | nucleus | 69.31 | 73.68 |
| Zm00001d038368_P002 | Maize | extracellular | 86.63 | 69.72 |
| HORVU1Hr1G072570.7 | Barley | cytosol, nucleus, plastid | 93.07 | 68.36 |
| TraesCS6B01G344100.1 | Wheat | plastid | 18.81 | 19.49 |
| TraesCS7B01G153100.1 | Wheat | golgi | 33.66 | 12.16 |
| TraesCS2B01G294500.1 | Wheat | cytosol | 32.67 | 11.24 |
| TraesCS2B01G063900.1 | Wheat | cytosol | 31.68 | 10.03 |
| TraesCS5B01G131200.1 | Wheat | cytosol | 18.32 | 10.0 |
| TraesCS1B01G192700.1 | Wheat | cytosol, mitochondrion | 23.27 | 7.74 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G292400.1 | EnsemblPlantsGene:TraesCS1B01G292400 | Gene3D:3.10.50.40 | InterPro:IPR001179 | InterPro:PPIase_FKBP | InterPro:PPIase_FKBP_dom |
| ncoils:Coil | PANTHER:PTHR10516 | PANTHER:PTHR10516:SF326 | PFAM:PF00254 | PFscan:PS50059 | SEG:seg |
| SUPFAM:SSF54534 | MapMan:18.12.2 | : | : | : | : |
Description
No Description!
Coordinates
chr1B:-:509891166..509892675
Molecular Weight (calculated)
21784.0 Da
IEP (calculated)
7.348
GRAVY (calculated)
-0.423
Length
202 amino acids
Sequence
(BLAST)
(BLAST)
001: MPCSFLLSEF PFNSKVMAET IDLTGDGGVL KTVVRKAKDD AISPSDSLPL VDVHYEGTLA ENGEVFDTTH EDNSIFTFEV GQGAVIKAWD IALRTMKVGE
101: IAKITCRPEY AYGSPGSPPE IPANATLIFE VELVACKPRK GSSLGSVSDE KARLEELKKQ RELAAATKEE EKKKREEAKA AAAARVQAKL DAKKGKGKGK
201: GK
101: IAKITCRPEY AYGSPGSPPE IPANATLIFE VELVACKPRK GSSLGSVSDE KARLEELKKQ RELAAATKEE EKKKREEAKA AAAARVQAKL DAKKGKGKGK
201: GK
001: MGDAIDLSGD GGVLKKIVRS AKPDAISPSD DLPVVDVHYE GILAEDEKVF DTTREDNLVF SFELGTGSVI RSWDIALKTM KVGEVAKITC KPEYAYGRAG
101: SPPDIPPDAT LIFEVELVAC RPRKGASVGS VSEERARLED LKKQREIAAA AKEDDKKKRE EAKAAAAARI QAKLDAKKGP GKGKGKGKAK
101: SPPDIPPDAT LIFEVELVAC RPRKGASVGS VSEERARLED LKKQREIAAA AKEDDKKKRE EAKAAAAARI QAKLDAKKGP GKGKGKGKAK
Arabidopsis Description
FKBP20-1Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178VDC9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.