Factsheet for PGSC0003DMT400016257

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
vacuole 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400075691

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55520.1	PGSC0003DMT400075691	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g011620.2.1	Tomato	nucleus	99.46	99.46
KRG97894	Soybean	cytosol	85.48	84.57
EES19645	Sorghum	nucleus	83.87	83.87
KRH30990	Soybean	cytosol	83.87	82.98
VIT_13s0019g01900.t01	Wine grape	cytosol	83.33	82.45
Os05t0458100-01	Rice	nucleus	82.26	82.26
GSMUA_AchrUn_...	Banana	nucleus	82.8	81.91
AT3G55520.1	Thale cress	nucleus	80.65	78.95
Os01t0844300-01	Rice	nucleus	78.49	78.92
Bra007173.1-P	Field mustard	nucleus	79.03	77.37
CDY40236	Canola	nucleus	79.03	77.37
CDY41214	Canola	nucleus	78.49	76.84
TraesCS1D01G282500.1	Wheat	nucleus	79.03	72.77
TraesCS1B01G292400.1	Wheat	nucleus	79.03	72.77
Zm00001d038368_P002	Maize	extracellular	83.33	61.75
HORVU1Hr1G072570.7	Barley	cytosol, nucleus, plastid	81.18	54.91
PGSC0003DMT400083778	Potato	cytosol	22.58	37.5
PGSC0003DMT400051809	Potato	cytosol	37.1	12.02
PGSC0003DMT400018490	Potato	cytosol	29.57	11.53
PGSC0003DMT400080935	Potato	cytosol	33.87	10.86
PGSC0003DMT400017681	Potato	cytosol	18.28	9.24
PGSC0003DMT400053619	Potato	cytosol	35.48	8.73
PGSC0003DMT400027559	Potato	cytosol, nucleus, plastid	23.12	7.36

Protein Annotations

EntrezGene:102605512	MapMan:18.12.2	Gene3D:3.10.50.40	ncoils:Coil	GO:GO:0000413	GO:GO:0003674
GO:GO:0003755	GO:GO:0003824	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016853	GO:GO:0019538	InterPro:IPR001179	UniProt:M1A7D2	PFAM:PF00254	EnsemblPlantsGene:PGSC0003DMG400006351
PGSC:PGSC0003DMG400006351	EnsemblPlants:PGSC0003DMT400016257	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50059	PANTHER:PTHR10516
PANTHER:PTHR10516:SF326	SUPFAM:SSF54534	UniParc:UPI000295AB33	RefSeq:XP_006346710.1	SEG:seg	:

Description

Fk506 binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006351]

Coordinates

chr4:-:7406855..7411891

Molecular Weight (calculated)

19923.8 Da

IEP (calculated)

7.266

GRAVY (calculated)

-0.465

Length

186 amino acids

Sequence
(BLAST)

001: MGDAIDLTGD GGVMKKIVQR SKPDAIAPSE SLPLVDVHYE GTLADTGEVF DTTREDNTIF SFEIGTGSVI KAWDVALRTM KVGEVAVITC KPEYAYGSAG
101: SPPDIPPEAT LVFEVELVAC RPRKGSSVSS ASDERARLEE LKKQREMAAA AKEEEKKKRE EAKAAAAARI QAKLEAKKGK GKGKAK

Best Arabidopsis Sequence Match ( AT3G55520.2 )
(BLAST)

001: MGDAIDLSGD GGVLKKIVRS AKPDAISPSD DLPVVDVHYE GILAEDEKVF DTTREDNLVF SFELGTGSVI RSWDIALKTM KVGEVAKITC KPEYAYGRAG
101: SPPDIPPDAT LIFEVELVAC RPRKGASVGS VSEERARLED LKKQREIAAA AKEDDKKKRE EAKAAAAARI QAKLDAKKGP GKGKGKGKAK

Arabidopsis Description

FKBP20-1Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178VDC9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.