Factsheet for PGSC0003DMT400053619

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g057660.2.1	Tomato	cytosol	70.77	96.05
PGSC0003DMT400051809	Potato	cytosol	64.95	85.54
VIT_00s0260g00070.t01	Wine grape	cytosol	11.51	85.29
GSMUA_Achr7P22780_001	Banana	cytosol	57.28	78.87
CDY52281	Canola	cytosol	58.07	78.67
KXG25560	Sorghum	cytosol	57.41	78.48
CDY15103	Canola	cytosol	57.8	78.32
AT3G25230.2	Thale cress	cytosol	58.2	78.29
CDY15104	Canola	cytosol	28.57	77.98
TraesCS7A01G257100.1	Wheat	cytosol	57.28	77.46
TraesCS7D01G257300.1	Wheat	cytosol	57.01	77.1
TraesCS7B01G153100.1	Wheat	golgi	56.88	76.92
Bra013224.1-P	Field mustard	cytosol	57.67	76.9
GSMUA_Achr10P...	Banana	cytosol	57.14	76.87
CDX86295	Canola	cytosol	57.28	75.57
Bra037477.1-P	Field mustard	cytosol	57.14	75.39
HORVU7Hr1G053170.6	Barley	cytosol	56.22	75.09
GSMUA_AchrUn_...	Banana	cytosol	57.54	74.87
Zm00001d031569_P001	Maize	plasma membrane	57.41	74.83
CDX85348	Canola	cytosol	56.22	74.56
AT5G48570.1	Thale cress	cytosol	56.61	74.05
Os08t0525600-01	Rice	cytosol, extracellular, plasma membrane, plastid	56.22	73.28
PGSC0003DMT400080935	Potato	cytosol	55.16	71.9
CDY00831	Canola	cytosol	15.08	60.0
PGSC0003DMT400018490	Potato	cytosol	32.94	52.2
PGSC0003DMT400027559	Potato	cytosol, nucleus, plastid	38.89	50.34
PGSC0003DMT400083778	Potato	cytosol	6.22	41.96
CDY00829	Canola	cytosol	19.44	41.18
PGSC0003DMT400016257	Potato	nucleus	8.73	35.48
PGSC0003DMT400017681	Potato	cytosol	12.43	25.54

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102589847	MapMan:18.12.2	Gene3D:3.10.50.40	Gene3D:3.30.1670.20	ncoils:Coil
GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538
InterPro:IPR001179	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	UniProt:M1BV78	PFAM:PF00254
PFAM:PF00515	EnsemblPlantsGene:PGSC0003DMG400020802	PGSC:PGSC0003DMG400020802	EnsemblPlants:PGSC0003DMT400053619	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom
PFscan:PS50005	PFscan:PS50059	PFscan:PS50293	PANTHER:PTHR10516	PANTHER:PTHR10516:SF338	SMART:SM00028
SUPFAM:SSF48452	SUPFAM:SSF54534	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_1	InterPro:TPR_repeat
UniParc:UPI000294B783	SEG:seg	:	:	:	:

Description

Peptidylprolyl isomerase [Source:PGSC_GENE;Acc:PGSC0003DMG400020802]

Coordinates

chr9:+:31983039..31988368

Molecular Weight (calculated)

83780.1 Da

IEP (calculated)

5.086

GRAVY (calculated)

-0.551

Length

756 amino acids

Sequence
(BLAST)

001: MDDDFDIPGA EGMDDDMDLP DESPIMKVGE EKEIGKEGLK KKLVKEGEGW DTPEAGDEVE VHYTGTLLDG TKFDSSRDRG TPFKFTLGQG QVIKGWDQGI
101: KTMKKAENAI FTIPPELAYG ESGSPPTIPP NSTLQFDVEL LSWVSVKDIC KDGGIFKKIL TKGEKWENPM DLDEVLVKYE AQLEDGSLVG KSDGVEFTVQ
201: EGHFCPAIAK AVKTMKKGEK VQLTVKPQYG FGEKGKPASG DGGAVPPNAT LQISLELVTW KTVSSVTDDK KLRILHYDPR GFIGYRRTEI GQVIKGWDQG
301: IKTMKKAENA IFTIPPELAY GESGSPPTIP PNSTLQFDVE LLSWVSVKDI CKDGGIFKKI LTKGEKWENP MDLDEVLVKY EAQLEDGSLV GKSDGVEFTV
401: QEGHFCPAIA KAVKTMKKGE KVQLTVKPQY GFGEKGKPAS GDGGAVPPNA TLQISLELVT WKTVSSVTDD KKVIKKILKE GEGFEKPNAG AVVKMKLIGK
501: LQDGTVFIKK GHNGENEDEL FEFKTDEEQV IDGLDRAVMS MKKGEVALLI IAPDYAFGPS ESKQDLGVVP PNSTVYYEVE LVSFVKEKES WDMNTQEKIE
601: AAVKKKEEGN ALFKAGKYAR ASTRYEKAAK FIEDDTDFSE EEKKQAKALK ISCNLNNAAC KLKLKDYKQA EKLCTKVLET ESTNVKALYR RAQAYMNMTD
701: LDLAEFDIKK ALEIDPNNRD VKLEYKALKE KVKEFNKKDA KFYGNMFARL NKLDAN

Best Arabidopsis Sequence Match ( AT3G25230.1 )
(BLAST)

001: MDANFEMPPV GGMNDDDDMD FGDGASFLKV GEEKEIQQGL KKKLLKEGEG YETPENGDEV EVHYTGTLLD GTKFDSSRDR ATPFKFTLGQ GQVIKGWDIG
101: IKTMKKGENA VFTIPAELAY GESGSPPTIP ANATLQFDVE LLKWDSVKDI CKDGGVFKKI LAVGEKWENP KDLDEVLVKF EAKLEDGTVV GKSDGVEFTV
201: KDGHFCPALT KAVKTMKKGE KVLLTVKPQY GFGEKGKPAS AGEGAVPPNA TLEINLELVS WKTVSEVTDD NKVVKKVLKE GDGYERPNEG AVVKVKLIGK
301: LQDGTVFLKK GHGENEEPFE FKTDEEQVVD GLDRAVMKMK KGEVALVTID PEYAFGSNES QQELAVVPPN STVTYEVDLL TFDKERESWD MNTEEKIEAA
401: SKKKEEGNSK FKGGKYSLAS KRYEKAVKFI EYDTSFSEEE KKQAKALKVA CNLNDAACKL KLKDYKQAEK LCTKVLELES TNVKALYRRA QAYMELSDLD
501: LAEFDVKKAL EIDPNNREVK LEQKRLKEKM KEFNKKEAKF YGNMFAKLSK E

Arabidopsis Description

ROF1Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:B3H746]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.