Factsheet for PGSC0003DMT400018490

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
plasma membrane 1
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g078250.1.1	Tomato	cytosol	16.56	86.81
VIT_08s0040g00790.t01	Wine grape	cytosol	59.96	60.08
KRH66687	Soybean	cytosol	59.96	52.96
KRG95045	Soybean	cytosol	15.09	52.17
PGSC0003DMT400080935	Potato	cytosol	51.78	42.59
PGSC0003DMT400051809	Potato	cytosol	50.73	42.16
PGSC0003DMT400083778	Potato	cytosol	9.64	41.07
PGSC0003DMT400027559	Potato	cytosol, nucleus, plastid	41.93	34.25
PGSC0003DMT400053619	Potato	cytosol	52.2	32.94
PGSC0003DMT400016257	Potato	nucleus	11.53	29.57
PGSC0003DMT400017681	Potato	cytosol	14.05	18.21

Protein Annotations

Gene3D:1.25.40.10	MapMan:18.12.2	Gene3D:3.10.50.40	ncoils:Coil	GO:GO:0000413	GO:GO:0003674
GO:GO:0003755	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	InterPro:IPR001179	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR019734	UniProt:M1AAQ8	PFAM:PF00254	PFAM:PF07719	EnsemblPlantsGene:PGSC0003DMG400007177
PGSC:PGSC0003DMG400007177	EnsemblPlants:PGSC0003DMT400018490	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50005	PFscan:PS50059
PFscan:PS50293	PANTHER:PTHR10516	PANTHER:PTHR10516:SF312	SMART:SM00028	SUPFAM:SSF48452	SUPFAM:SSF54534
InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_2	InterPro:TPR_repeat	UniParc:UPI000295FD76	:

Description

Peptidylprolyl isomerase [Source:PGSC_GENE;Acc:PGSC0003DMG400007177]

Coordinates

chr10:+:59460901..59465419

Molecular Weight (calculated)

54118.0 Da

IEP (calculated)

6.642

GRAVY (calculated)

-0.445

Length

477 amino acids

Sequence
(BLAST)

001: MGDFNSKKSN KVNFETKIQE LQEIVIGKEG LRKKILQKGN SWKTPFHGDE IQVHYRVKLQ DGEFFDSSYD RGKPFTFKLG QGEVIKGWDE GIATMKKSER
101: AIFTIPPNLA YGEIGSPPLI PPNSTLIFEI ELISWNSIRD ISGDGGILKK IIKEGQGWAT PRDVDEVLVK YVASSADGII LSQYDDAVEF SLMEGHLYPA
201: MKKSLKTMRK GEIVELTVKP AYYFGNSSFD GDGIGILQSS NSNLIIHLEL ISWKSVVDVI GDNKVLKKLI KAGEGYDHPN EGSLAKVIYI GKLQDGTIFE
301: RKGSDEEPFE YVCLEGQLNE NLDRAIMTMK KGEEAIVTIN SDSMFYEIKL VDFNKASKFI QFDHSFNNDE KCRANTLRLS CYLNNAACKL KMGEHQEASK
401: LCSKVIEYDP CNVKALFRRA QAYLRINELE RAEIDIKKAL EVDPNNRDVK MMYKELKNKQ KQYAQQEVEI FSTMLSR

Best Arabidopsis Sequence Match ( AT3G25230.1 )
(BLAST)

001: MDANFEMPPV GGMNDDDDMD FGDGASFLKV GEEKEIQQGL KKKLLKEGEG YETPENGDEV EVHYTGTLLD GTKFDSSRDR ATPFKFTLGQ GQVIKGWDIG
101: IKTMKKGENA VFTIPAELAY GESGSPPTIP ANATLQFDVE LLKWDSVKDI CKDGGVFKKI LAVGEKWENP KDLDEVLVKF EAKLEDGTVV GKSDGVEFTV
201: KDGHFCPALT KAVKTMKKGE KVLLTVKPQY GFGEKGKPAS AGEGAVPPNA TLEINLELVS WKTVSEVTDD NKVVKKVLKE GDGYERPNEG AVVKVKLIGK
301: LQDGTVFLKK GHGENEEPFE FKTDEEQVVD GLDRAVMKMK KGEVALVTID PEYAFGSNES QQELAVVPPN STVTYEVDLL TFDKERESWD MNTEEKIEAA
401: SKKKEEGNSK FKGGKYSLAS KRYEKAVKFI EYDTSFSEEE KKQAKALKVA CNLNDAACKL KLKDYKQAEK LCTKVLELES TNVKALYRRA QAYMELSDLD
501: LAEFDVKKAL EIDPNNREVK LEQKRLKEKM KEFNKKEAKF YGNMFAKLSK E

Arabidopsis Description

ROF1Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:B3H746]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.