Factsheet for PGSC0003DMT400051809

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
peroxisome 2
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g083190.2.1	Tomato	extracellular	97.04	97.04
KXG25560	Sorghum	cytosol	78.4	81.37
TraesCS7A01G257100.1	Wheat	cytosol	78.75	80.86
TraesCS7D01G257300.1	Wheat	cytosol	78.57	80.68
TraesCS7B01G153100.1	Wheat	golgi	78.4	80.5
CDY52281	Canola	cytosol	78.22	80.47
VIT_00s0260g00070.t01	Wine grape	cytosol	14.29	80.39
GSMUA_Achr7P22780_001	Banana	cytosol	76.83	80.33
CDY15104	Canola	cytosol	38.68	80.14
CDY15103	Canola	cytosol	77.87	80.11
AT3G25230.2	Thale cress	cytosol	78.22	79.89
HORVU7Hr1G053170.6	Barley	cytosol	77.7	78.8
Bra013224.1-P	Field mustard	cytosol	77.7	78.66
CDX86295	Canola	cytosol	77.87	78.01
Bra037477.1-P	Field mustard	cytosol	77.87	78.01
GSMUA_AchrUn_...	Banana	cytosol	78.92	77.97
GSMUA_Achr10P...	Banana	cytosol	76.13	77.76
Os08t0525600-01	Rice	cytosol, extracellular, plasma membrane, plastid	78.4	77.59
Zm00001d031569_P001	Maize	plasma membrane	78.22	77.41
CDX85348	Canola	cytosol	76.48	77.02
AT5G48570.1	Thale cress	cytosol	77.18	76.64
PGSC0003DMT400080935	Potato	cytosol	75.78	75.0
PGSC0003DMT400053619	Potato	cytosol	85.54	64.95
CDY00831	Canola	cytosol	19.51	58.95
PGSC0003DMT400018490	Potato	cytosol	42.16	50.73
PGSC0003DMT400027559	Potato	cytosol, nucleus, plastid	51.39	50.51
CDY00829	Canola	cytosol	27.18	43.7
PGSC0003DMT400083778	Potato	cytosol	8.19	41.96
PGSC0003DMT400016257	Potato	nucleus	12.02	37.1
PGSC0003DMT400017681	Potato	cytosol	16.9	26.36

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102590789	MapMan:18.12.2	Gene3D:3.10.50.40	Gene3D:3.30.1670.20	ncoils:Coil
GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538
InterPro:IPR001179	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	UniProt:M1BS90	PFAM:PF00254
PFAM:PF00515	EnsemblPlantsGene:PGSC0003DMG400020107	PGSC:PGSC0003DMG400020107	EnsemblPlants:PGSC0003DMT400051809	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom
PFscan:PS50005	PFscan:PS50059	PFscan:PS50293	PANTHER:PTHR10516	PANTHER:PTHR10516:SF338	SMART:SM00028
SUPFAM:SSF48452	SUPFAM:SSF54534	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_1	InterPro:TPR_repeat
UniParc:UPI0002963662	RefSeq:XP_006352668.1	SEG:seg	:	:	:

Description

Peptidylprolyl isomerase [Source:PGSC_GENE;Acc:PGSC0003DMG400020107]

Coordinates

chr6:-:58194667..58198707

Molecular Weight (calculated)

63499.3 Da

IEP (calculated)

4.977

GRAVY (calculated)

-0.654

Length

574 amino acids

Sequence
(BLAST)

001: MDEDFGIPPV EGMNEDMDLP DDSSTLKVGE EKEIGNQGLK KKLVKEGEGW DTPAPGDEVE VHYTGTLLDG TKFDSSRDRG DPFKFTLGQG QVIKGWDQGI
101: NTMKKGENAI FTIPPELAYG ESGSPPTIPP NATLQFDVEL LSWVSVKDIC KDGGIFKKIL TEGEKWENPK DLDEVFVKYE AQLENGTVVG KSDGVEFTVQ
201: DGHFCPALAK AVKTMKKGEK VQLTVKPQYG FGEKGKPASS DGGAVPPNAT LQINLELVSW KTVSNVTDDK KVLKKILKEG EGYERPNEGA VVKLKLVGKL
301: LDGTVFTKKG HDGENEDNLF EFKTDEEQVI DGLDRAVMTM KKGEAALLTI APEYAFGSSE SKQDLAVVPP NSTVHYEVEL VSFVKDKESW DMNTPEKIEA
401: AGKKKEEGNA LFKAGKYARA SKRYEKAAKF IEYDTSFSEE EKKQSKALKI TCNLNNAACK LKLKDYKQAE KLCTKVLELD SANVKALYRR AQAYMNMADL
501: DLAEFDIKKA LEIDPDNRDV KLEYKALKEK VKEINKKDAK FYGNMFAKLN KQDAANSANS AAKEPEPMSI DSKA

Best Arabidopsis Sequence Match ( AT3G25230.1 )
(BLAST)

001: MDANFEMPPV GGMNDDDDMD FGDGASFLKV GEEKEIQQGL KKKLLKEGEG YETPENGDEV EVHYTGTLLD GTKFDSSRDR ATPFKFTLGQ GQVIKGWDIG
101: IKTMKKGENA VFTIPAELAY GESGSPPTIP ANATLQFDVE LLKWDSVKDI CKDGGVFKKI LAVGEKWENP KDLDEVLVKF EAKLEDGTVV GKSDGVEFTV
201: KDGHFCPALT KAVKTMKKGE KVLLTVKPQY GFGEKGKPAS AGEGAVPPNA TLEINLELVS WKTVSEVTDD NKVVKKVLKE GDGYERPNEG AVVKVKLIGK
301: LQDGTVFLKK GHGENEEPFE FKTDEEQVVD GLDRAVMKMK KGEVALVTID PEYAFGSNES QQELAVVPPN STVTYEVDLL TFDKERESWD MNTEEKIEAA
401: SKKKEEGNSK FKGGKYSLAS KRYEKAVKFI EYDTSFSEEE KKQAKALKVA CNLNDAACKL KLKDYKQAEK LCTKVLELES TNVKALYRRA QAYMELSDLD
501: LAEFDVKKAL EIDPNNREVK LEQKRLKEKM KEFNKKEAKF YGNMFAKLSK E

Arabidopsis Description

ROF1Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:B3H746]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.