Factsheet for PGSC0003DMT400027559

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 2
plasma membrane 1
vacuole 1
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g077660.2.1	Tomato	cytosol	95.21	95.21
VIT_18s0001g08830.t01	Wine grape	cytosol	64.21	62.5
KRG88759	Soybean	cytosol	60.27	60.48
KRH05556	Soybean	cytosol	58.22	58.32
AT1G58450.1	Thale cress	cytosol	16.1	57.32
GSMUA_Achr8P04930_001	Banana	cytosol	56.51	51.97
PGSC0003DMT400051809	Potato	cytosol	50.51	51.39
PGSC0003DMT400080935	Potato	cytosol	49.83	50.17
PGSC0003DMT400018490	Potato	cytosol	34.25	41.93
PGSC0003DMT400053619	Potato	cytosol	50.34	38.89
PGSC0003DMT400083778	Potato	cytosol	6.68	34.82
PGSC0003DMT400017681	Potato	cytosol	15.75	25.0
PGSC0003DMT400016257	Potato	nucleus	7.36	23.12

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102585299	MapMan:18.12.2	Gene3D:3.10.50.40	Gene3D:3.30.1670.20	ncoils:Coil
GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538
InterPro:IPR001179	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	UniProt:M1APU7	PFAM:PF00254
PFAM:PF13181	EnsemblPlantsGene:PGSC0003DMG400010624	PGSC:PGSC0003DMG400010624	EnsemblPlants:PGSC0003DMT400027559	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom
PFscan:PS50005	PFscan:PS50059	PFscan:PS50293	PANTHER:PTHR10516	PANTHER:PTHR10516:SF393	SMART:SM00028
SUPFAM:SSF48452	SUPFAM:SSF54534	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI00029512EC
RefSeq:XP_006356849.1	SEG:seg	:	:	:	:

Description

Peptidylprolyl isomerase [Source:PGSC_GENE;Acc:PGSC0003DMG400010624]

Coordinates

chr4:+:66815960..66824665

Molecular Weight (calculated)

65129.6 Da

IEP (calculated)

4.830

GRAVY (calculated)

-0.464

Length

584 amino acids

Sequence
(BLAST)

001: MVEFSMANAQ AFIDEDDELD EEPGEEIESA PPLNVGEERE INSNGLKKKL LKHGQGWETP EFGDEVTVHY VGILHDGTKS VSTRDKVEPF TFKLGQEKVA
101: AGLDRGIVTM RKGEGALFTL PSETAFGSSD SDAVSSNSVV QFEVELVSWI TVVDVCKDGG IIKKILEKGE MIGPPGDLDE VLVRYVVRLL DGNTVAKSSE
201: HGVEFYVKDG HFCQALPKAI KTMRKGEKVN LLIQPQYASV DRDKDSESGV PSIPPSSILS IDLELVSFKP VINVTGDLGV LKKILKEGEG TLTADEGAAV
301: TIRYTAKLVD GTLLEKRGFD GEDALKFITD EEQVVAGLDQ AVTTMKKGEH AIVTVKPDYG FGNTEVKRDL AMVPPCSTII FEVEMLEFTK EKDPREMNKH
401: ERIQMAQRKK EEGNLLFKNG KYQRAMKKYE KATDCINEDE HFEDDDQKIV KSLRVSCWLN GAAACLKRNY FQEAIKQCSK VLEVESCNVK ALYRRAQAFM
501: ETADLHLAEL DIKKALEIDP QNREVKLIQK NLKQLQAESN KRDAKLYTTM FARLSNENSS AAKRLKVEET ENKNEENVGE INMC

Best Arabidopsis Sequence Match ( AT1G58450.1 )
(BLAST)

001: MNNGEKIEAA NRKKEEGNLL YKTQKYERAA KKYNKAAECI ENGKFEGGDE KQVKALRVSC FLNGAACSLK LKNFLETIVL CSEVLDIEFQ NVKALYRRAQ
101: SYIEVGDLIS AEMDINRALE ADPENREVKS LYKAMKLSKA ESDRRDAKLY ANMFALSKVR THFP

Arabidopsis Description

TPR6Peptidylprolyl isomerase, putative [Source:UniProtKB/TrEMBL;Acc:Q9C650]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.