CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plasma membrane 1
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031569_P001	Maize	plasma membrane	96.38	91.9
TraesCS7D01G257300.1	Wheat	cytosol	89.87	88.91
TraesCS7A01G257100.1	Wheat	cytosol	89.51	88.55
TraesCS7B01G153100.1	Wheat	golgi	89.33	88.37
HORVU7Hr1G053170.6	Barley	cytosol	88.25	86.22
Os08t0525600-01	Rice	cytosol, extracellular, plasma membrane, plastid	90.42	86.21
GSMUA_Achr7P22780_001	Banana	cytosol	82.46	83.06
CDY15104	Canola	cytosol	40.51	80.87
GSMUA_Achr10P...	Banana	cytosol	80.65	79.36
CDY52281	Canola	cytosol	79.57	78.85
CDY15103	Canola	cytosol	79.39	78.67
GSMUA_AchrUn_...	Banana	cytosol	82.46	78.49
PGSC0003DMT400051809	Potato	cytosol	81.37	78.4
Solyc06g083190.2.1	Tomato	extracellular	81.19	78.22
Solyc09g057660.2.1	Tomato	cytosol	78.12	77.56
Bra013224.1-P	Field mustard	cytosol	79.2	77.25
AT3G25230.2	Thale cress	cytosol	78.12	76.87
CDX86295	Canola	cytosol	77.22	74.52
CDX85348	Canola	cytosol	76.67	74.39
Bra037477.1-P	Field mustard	cytosol	76.85	74.17
EER88340	Sorghum	cytosol	78.66	73.48
AT5G48570.1	Thale cress	cytosol	75.59	72.32
VIT_00s0260g00070.t01	Wine grape	cytosol	13.02	70.59
OQU84952	Sorghum	cytosol	74.5	57.7
PGSC0003DMT400053619	Potato	cytosol	78.48	57.41
CDY00831	Canola	cytosol	19.53	56.84
EES07562	Sorghum	cytosol, mitochondrion, plastid	8.68	42.86
CDY00829	Canola	cytosol	26.76	41.46
EES19645	Sorghum	nucleus	12.3	36.56
EES07974	Sorghum	cytosol	18.81	28.26
EER94808	Sorghum	cytosol	30.38	26.67
OQU80175	Sorghum	mitochondrion	3.98	13.66

Protein Annotations

Gene3D:1.25.40.10	MapMan:18.12.2	Gene3D:3.10.50.40	Gene3D:3.30.1670.20	UniProt:A0A1B6PIQ0	ncoils:Coil
GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538
InterPro:IPR001179	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	ProteinID:KXG25558.1	EnsemblPlants:KXG25560
ProteinID:KXG25560	ProteinID:KXG25560.1	PFAM:PF00254	PFAM:PF14559	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom
PFscan:PS50005	PFscan:PS50059	PFscan:PS50293	PANTHER:PTHR10516	PANTHER:PTHR10516:SF386	SMART:SM00028
EnsemblPlantsGene:SORBI_3007G197200	SUPFAM:SSF48452	SUPFAM:SSF54534	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat
UniParc:UPI0001EF04A6	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:62874860..62878738

Molecular Weight (calculated)

61694.4 Da

IEP (calculated)

5.002

GRAVY (calculated)

-0.674

Length

553 amino acids

Sequence
(BLAST)

001: MDDDFEMPTA GADEMMGDDE MGDFGGDEGP VLKVGEEKEV GKQGLKKKLL KEGEGWETPE VGDEVEVHYT GTLLDGTKFD SSRDRGDPFK FKLGQGQVIK
101: GWDQGIKTMK KGENAVFTIP PELAYGASGS PPTIPPNATL QFDVELLSWT SVKDICKDGG IFKKILKEGE KWENPKDPDE VLVKYEARLE DGTVVSKSEG
201: VEFTVKDGYF CPALAKAVKT MKKAEKVLLT VKPQYGFGEK GRPAAGEEGG VPPNATLHID LELVSWKTVT EIGDDKKILK KVLKEGEGYE RPNEGAVVEV
301: KITGKLQDGT VFTKKGHDEE PFKFKTDEEE VIDGLDRAVL NMKKGEVALV TIPPEYAFGS TESKQDLAVV PPNSTVVYEV ELVSFVKDKE SWDLNNEEKI
401: EAAGKKKEEG NALFKLGKYA RASKRYEKAA KYIEYESSFS EDEKKQSKQL KISCNLNNAA CKLKLKDYKE AAKLCTKVLE LDSQNVKALY RRVQAYIQLA
501: DLELAEADIK KALEIDPNNR DVKLEYKTLK EKIKEYNKKD AKFYSNMFAK MTK

Best Arabidopsis Sequence Match ( AT3G25230.1 )
(BLAST)

001: MDANFEMPPV GGMNDDDDMD FGDGASFLKV GEEKEIQQGL KKKLLKEGEG YETPENGDEV EVHYTGTLLD GTKFDSSRDR ATPFKFTLGQ GQVIKGWDIG
101: IKTMKKGENA VFTIPAELAY GESGSPPTIP ANATLQFDVE LLKWDSVKDI CKDGGVFKKI LAVGEKWENP KDLDEVLVKF EAKLEDGTVV GKSDGVEFTV
201: KDGHFCPALT KAVKTMKKGE KVLLTVKPQY GFGEKGKPAS AGEGAVPPNA TLEINLELVS WKTVSEVTDD NKVVKKVLKE GDGYERPNEG AVVKVKLIGK
301: LQDGTVFLKK GHGENEEPFE FKTDEEQVVD GLDRAVMKMK KGEVALVTID PEYAFGSNES QQELAVVPPN STVTYEVDLL TFDKERESWD MNTEEKIEAA
401: SKKKEEGNSK FKGGKYSLAS KRYEKAVKFI EYDTSFSEEE KKQAKALKVA CNLNDAACKL KLKDYKQAEK LCTKVLELES TNVKALYRRA QAYMELSDLD
501: LAEFDVKKAL EIDPNNREVK LEQKRLKEKM KEFNKKEAKF YGNMFAKLSK E

Arabidopsis Description

ROF1Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:B3H746]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.