CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

nucleus 1
cytosol 1
vacuole 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES04471

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64350.1	EES04471	AT3G54170.1	9807817

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018134_P001	Maize	mitochondrion	94.64	94.64
Os02t0760300-01	Rice	extracellular	89.29	89.29
Solyc01g105710.2.1	Tomato	extracellular	82.14	82.14
PGSC0003DMT400083778	Potato	cytosol	82.14	82.14
VIT_03s0017g01060.t01	Wine grape	cytosol, mitochondrion, plastid	79.46	79.46
KRH21780	Soybean	cytosol, mitochondrion, plastid	79.46	79.46
CDY46798	Canola	cytosol	51.79	78.38
AT5G64350.1	Thale cress	cytosol, mitochondrion, plastid	76.79	76.79
Bra037775.1-P	Field mustard	cytosol, mitochondrion, plastid	76.79	76.79
CDX84517	Canola	cytosol, mitochondrion, plastid	75.89	75.89
Bra024287.1-P	Field mustard	cytosol, mitochondrion, plastid	72.32	72.32
CDY58272	Canola	cytosol, mitochondrion, plastid	72.32	72.32
CDX81222	Canola	cytosol, mitochondrion, plastid	71.43	71.43
CDY18714	Canola	endoplasmic reticulum, extracellular	75.89	65.89
KRH10589	Soybean	cytosol	79.46	63.57
GSMUA_Achr5P05550_001	Banana	cytosol, mitochondrion, plastid	66.07	61.16
TraesCS6A01G314100.1	Wheat	plastid	90.18	52.33
TraesCS6D01G293400.1	Wheat	cytosol	90.18	51.79
TraesCS6B01G344100.1	Wheat	plastid	90.18	51.79
CDY31323	Canola	extracellular	57.14	48.48
HORVU6Hr1G077340.1	Barley	mitochondrion	86.61	40.25
EES19645	Sorghum	nucleus	37.5	22.58
KXG25560	Sorghum	cytosol	42.86	8.68
EER88340	Sorghum	cytosol	41.07	7.77
EES07974	Sorghum	cytosol	23.21	7.07
OQU84952	Sorghum	cytosol	40.18	6.3
OQU80175	Sorghum	mitochondrion	8.93	6.21
EER94808	Sorghum	cytosol	31.25	5.56

Protein Annotations

MapMan:18.12.2	Gene3D:3.10.50.40	EntrezGene:8075186	UniProt:C5XSS1	EnsemblPlants:EES07562	ProteinID:EES07562
ProteinID:EES07562.1	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005488
GO:GO:0005528	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538
GO:GO:0061077	InterPro:IPR001179	PFAM:PF00254	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50059
PANTHER:PTHR10516	PANTHER:PTHR10516:SF214	EnsemblPlantsGene:SORBI_3004G306200	SUPFAM:SSF54534	unigene:Sbi.18062	UniParc:UPI0001A8610D
RefSeq:XP_002454586.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:64451754..64453755

Molecular Weight (calculated)

12170.6 Da

IEP (calculated)

8.717

GRAVY (calculated)

-0.295

Length

112 amino acids

Sequence
(BLAST)

001: MGFEKQILRA GTGPKPVKGQ KVTVHCTGYG KDRDLSKKFW STKDPGQQPF SFNIGLGSVI KGWDEGVMTM QVGEVARIQC TPDYAYGAGG FQAWGIQPNS
101: VLAFEIEVLS AQ

Best Arabidopsis Sequence Match ( AT5G64350.1 )
(BLAST)

001: MGVEKQVIRP GNGPKPAPGQ TVTVHCTGFG KDGDLSQKFW STKDEGQKPF SFQIGKGAVI KGWDEGVIGM QIGEVARLRC SSDYAYGAGG FPAWGIQPNS
101: VLDFEIEVLS VQ

Arabidopsis Description

FKBP12Peptidyl-prolyl cis-trans isomerase FKBP12 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGG0]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.