Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 5
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
HORVU7Hr1G048110.2 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT5G64350.1 | HORVU7Hr1G048110.2 | AT3G54170.1 | 9807817 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS6D01G293400.1 | Wheat | cytosol | 73.86 | 91.28 |
TraesCS6A01G314100.1 | Wheat | plastid | 71.78 | 89.64 |
TraesCS6B01G344100.1 | Wheat | plastid | 72.2 | 89.23 |
EES07562 | Sorghum | cytosol, mitochondrion, plastid | 40.25 | 86.61 |
Zm00001d018134_P001 | Maize | mitochondrion | 39.0 | 83.93 |
Os02t0760300-01 | Rice | extracellular | 37.34 | 80.36 |
Solyc01g105710.2.1 | Tomato | extracellular | 36.93 | 79.46 |
PGSC0003DMT400083778 | Potato | cytosol | 36.93 | 79.46 |
VIT_03s0017g01060.t01 | Wine grape | cytosol, mitochondrion, plastid | 36.1 | 77.68 |
KRH21780 | Soybean | cytosol, mitochondrion, plastid | 35.68 | 76.79 |
Bra037775.1-P | Field mustard | cytosol, mitochondrion, plastid | 34.85 | 75.0 |
CDY46798 | Canola | cytosol | 22.82 | 74.32 |
AT5G64350.1 | Thale cress | cytosol, mitochondrion, plastid | 34.02 | 73.21 |
CDX84517 | Canola | cytosol, mitochondrion, plastid | 34.02 | 73.21 |
Bra024287.1-P | Field mustard | cytosol, mitochondrion, plastid | 32.78 | 70.54 |
CDY58272 | Canola | cytosol, mitochondrion, plastid | 32.78 | 70.54 |
CDX81222 | Canola | cytosol, mitochondrion, plastid | 32.78 | 70.54 |
CDY18714 | Canola | endoplasmic reticulum, extracellular | 34.44 | 64.34 |
KRH10589 | Soybean | cytosol | 35.68 | 61.43 |
GSMUA_Achr5P05550_001 | Banana | cytosol, mitochondrion, plastid | 29.46 | 58.68 |
CDY31323 | Canola | extracellular | 26.97 | 49.24 |
HORVU1Hr1G072570.7 | Barley | cytosol, nucleus, plastid | 18.67 | 16.36 |
HORVU2Hr1G008030.1 | Barley | cytosol, nucleus | 3.73 | 11.84 |
HORVU7Hr1G053170.6 | Barley | cytosol | 20.75 | 8.83 |
HORVU2Hr1G067750.9 | Barley | cytosol | 21.16 | 8.61 |
HORVU2Hr1G007980.1 | Barley | cytosol, mitochondrion | 22.82 | 8.17 |
HORVU5Hr1G041060.1 | Barley | cytosol, plastid | 13.28 | 7.53 |
HORVU4Hr1G042800.9 | Barley | cytosol | 17.84 | 6.48 |
Protein Annotations
MapMan:18.12.2 | Gene3D:3.10.50.40 | UniProt:A0A287UT13 | GO:GO:0000413 | GO:GO:0003674 | GO:GO:0003755 |
GO:GO:0003824 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016853 |
GO:GO:0019538 | EnsemblPlantsGene:HORVU6Hr1G077340 | EnsemblPlants:HORVU6Hr1G077340.1 | InterPro:IPR001179 | PFAM:PF00254 | InterPro:PPIase_FKBP |
InterPro:PPIase_FKBP_dom | PFscan:PS50059 | PANTHER:PTHR10516 | PANTHER:PTHR10516:SF214 | SUPFAM:SSF54534 | UniParc:UPI000B478FE7 |
SEG:seg | : | : | : | : | : |
Description
Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:A0A287UT13]
Coordinates
chrchr6H:+:529873055..529879938
Molecular Weight (calculated)
25601.9 Da
IEP (calculated)
9.623
GRAVY (calculated)
-0.232
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MLVCPHGRCL SGTRHQAPGL VRCPLVHSFS THLLLLSAPP TFPLEMRAEL LLLGGKVSTA AAASGAAAAS LAGAGRCVAG GRRLAPVQPA ALQWRHSSRT
101: RTHTTTDQRP PHQRCAAAEL WRGDAEDGKM GIQKEILRAG TGPKPVKGQK VTVHCTGYGK DGDLSKKFWS TKDPGQQPFA FNIGLGSVIK GWDEGVMDMQ
201: LGEVARLKCT PDYAYGSGGS PAWGIQPNSE LIFEIEVLSA K
101: RTHTTTDQRP PHQRCAAAEL WRGDAEDGKM GIQKEILRAG TGPKPVKGQK VTVHCTGYGK DGDLSKKFWS TKDPGQQPFA FNIGLGSVIK GWDEGVMDMQ
201: LGEVARLKCT PDYAYGSGGS PAWGIQPNSE LIFEIEVLSA K
001: MGVEKQVIRP GNGPKPAPGQ TVTVHCTGFG KDGDLSQKFW STKDEGQKPF SFQIGKGAVI KGWDEGVIGM QIGEVARLRC SSDYAYGAGG FPAWGIQPNS
101: VLDFEIEVLS VQ
101: VLDFEIEVLS VQ
Arabidopsis Description
FKBP12Peptidyl-prolyl cis-trans isomerase FKBP12 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGG0]
SUBAcon: [mitochondrion,plastid,cytosol]
SUBAcon: [mitochondrion,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.