Subcellular Localization
min:
: max
Winner_takes_all: cytosol, plastid, mitochondrion
Predictor Summary:
Predictor Summary:
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
- cytosol 1
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY58272 | Canola | cytosol, mitochondrion, plastid | 95.54 | 95.54 |
| CDY46798 | Canola | cytosol | 62.5 | 94.59 |
| AT5G64350.1 | Thale cress | cytosol, mitochondrion, plastid | 92.86 | 92.86 |
| CDX81222 | Canola | cytosol, mitochondrion, plastid | 87.5 | 87.5 |
| KRH21780 | Soybean | cytosol, mitochondrion, plastid | 83.93 | 83.93 |
| CDY18714 | Canola | endoplasmic reticulum, extracellular | 93.75 | 81.4 |
| VIT_03s0017g01060.t01 | Wine grape | cytosol, mitochondrion, plastid | 80.36 | 80.36 |
| Solyc01g105710.2.1 | Tomato | extracellular | 80.36 | 80.36 |
| PGSC0003DMT400083778 | Potato | cytosol | 79.46 | 79.46 |
| Zm00001d018134_P001 | Maize | mitochondrion | 76.79 | 76.79 |
| EES07562 | Sorghum | cytosol, mitochondrion, plastid | 75.89 | 75.89 |
| Os02t0760300-01 | Rice | extracellular | 74.11 | 74.11 |
| KRH10589 | Soybean | cytosol | 83.04 | 66.43 |
| CDY31323 | Canola | extracellular | 66.96 | 56.82 |
| CDY02979 | Canola | mitochondrion | 52.68 | 50.0 |
| TraesCS6A01G314100.1 | Wheat | plastid | 76.79 | 44.56 |
| TraesCS6D01G293400.1 | Wheat | cytosol | 76.79 | 44.1 |
| TraesCS6B01G344100.1 | Wheat | plastid | 76.79 | 44.1 |
| HORVU6Hr1G077340.1 | Barley | mitochondrion | 73.21 | 34.02 |
| CDY40236 | Canola | nucleus | 39.29 | 23.16 |
| CDY41214 | Canola | nucleus | 38.39 | 22.63 |
| CDY15104 | Canola | cytosol | 37.5 | 15.16 |
| CDY34049 | Canola | cytosol | 8.93 | 9.9 |
| CDX73664 | Canola | cytosol | 27.68 | 8.31 |
| CDX78057 | Canola | cytosol | 25.89 | 8.19 |
| CDY29061 | Canola | cytosol | 25.89 | 8.12 |
| CDX90622 | Canola | cytosol | 28.57 | 8.1 |
| CDX86295 | Canola | cytosol | 39.29 | 7.68 |
| CDX85348 | Canola | cytosol | 38.39 | 7.54 |
| CDY15103 | Canola | cytosol | 37.5 | 7.53 |
| CDY52281 | Canola | cytosol | 37.5 | 7.53 |
| CDY15096 | Canola | cytosol | 36.61 | 5.82 |
| CDY00829 | Canola | cytosol | 17.86 | 5.6 |
| CDX76177 | Canola | cytosol | 29.46 | 5.21 |
| CDY13167 | Canola | cytosol | 29.46 | 5.14 |
| CDY07563 | Canola | cytosol | 28.57 | 4.98 |
| CDX67584 | Canola | cytosol | 27.68 | 4.78 |
| CDY64639 | Canola | endoplasmic reticulum, extracellular | 4.46 | 1.87 |
| CDY00831 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX84517 | EnsemblPlantsGene:GSBRNA2T00141750001 | Gene3D:3.10.50.40 | GO:A0A078D5V6 | InterPro:IPR001179 | InterPro:PPIase_FKBP |
| InterPro:PPIase_FKBP_dom | PANTHER:PTHR10516 | PANTHER:PTHR10516:SF214 | PFAM:PF00254 | PFscan:PS50059 | ProteinID:CDX84517 |
| ProteinID:CDX84517.1 | SUPFAM:SSF54534 | UniParc:UPI0004EAFD18 | MapMan:18.12.2 | : | : |
Description
BnaC03g49830D
Coordinates
chrLK031837:-:1579231..1580598
Molecular Weight (calculated)
11887.2 Da
IEP (calculated)
7.255
GRAVY (calculated)
-0.212
Length
112 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVEKQVIRP GTGAKPAPGQ TVTVHCTGFG KGGDLSQQFW STKDAGQKPF SFQIGKGAVI KGWDEGVMGM QIGEVARLRC SPDYAYGPGG FPAWGIQPNS
101: VLDFEIEVLS VQ
101: VLDFEIEVLS VQ
001: MGVEKQVIRP GNGPKPAPGQ TVTVHCTGFG KDGDLSQKFW STKDEGQKPF SFQIGKGAVI KGWDEGVIGM QIGEVARLRC SSDYAYGAGG FPAWGIQPNS
101: VLDFEIEVLS VQ
101: VLDFEIEVLS VQ
Arabidopsis Description
FKBP12Peptidyl-prolyl cis-trans isomerase FKBP12 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGG0]
SUBAcon: [cytosol,plastid,mitochondrion]
SUBAcon: [cytosol,plastid,mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.