CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79704
CDX84290
CDX84896
CDX84897
CDX86408
CDY00109
CDY20012
CDY27639
CDY27839
CDY31633
CDY46744
CDY50297
CDY65012

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21640.1	CDX84896	AT1G27940.1	14517332
AT3G21640.1	CDX84897	AT1G27940.1	14517332
AT3G21640.1	CDY27639	AT1G27940.1	14517332
AT3G21640.1	CDX84290	AT2G34660.1	15133126
AT3G21640.1	CDY31633	AT2G34660.1	15133126
AT3G21640.1	CDX79704	AT2G36910.1	14517332
AT3G21640.1	CDY46744	AT2G36910.1	14517332
AT3G21640.1	CDX86408	AT3G28860.1	14517332
AT3G21640.1	CDY00109	AT3G28860.1	14517332
AT3G21640.1	CDY20012	AT3G28860.1	14517332
AT3G21640.1	CDY65012	AT3G28860.1	14517332
AT3G21640.1	CDY27839	AT5G52640.1	12410806
AT3G21640.1	CDY50297	AT5G52640.1	12410806

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78057	Canola	cytosol	91.69	96.61
CDY34049	Canola	cytosol	26.01	96.04
CDY29061	Canola	cytosol	89.01	93.0
AT3G21640.1	Thale cress	cytosol	87.4	89.32
CDX90622	Canola	cytosol	92.76	87.59
CDY64639	Canola	endoplasmic reticulum, extracellular	59.52	82.84
VIT_13s0064g00580.t01	Wine grape	cytosol	75.07	76.71
KRH23877	Soybean	cytosol, endoplasmic reticulum, nucleus	72.12	72.7
PGSC0003DMT400017681	Potato	cytosol	70.78	71.74
KRH39924	Soybean	endoplasmic reticulum	71.05	71.62
Solyc01g087470.2.1	Tomato	cytosol	60.86	69.85
GSMUA_Achr6P12690_001	Banana	cytosol	69.71	69.52
EES07974	Sorghum	cytosol	67.56	68.48
Zm00001d004930_P001	Maize	mitochondrion	66.76	66.58
Os12t0145500-01	Rice	cytosol	65.95	66.49
Os11t0148300-01	Rice	cytosol	66.49	66.13
TraesCS5A01G134500.3	Wheat	cytosol	63.54	64.23
TraesCS5B01G131200.1	Wheat	cytosol	63.54	64.05
TraesCS5D01G139000.1	Wheat	cytosol	63.0	63.51
HORVU5Hr1G041060.1	Barley	cytosol, plastid	63.81	56.0
CDX84517	Canola	cytosol, mitochondrion, plastid	8.31	27.68
CDY46798	Canola	cytosol	5.36	27.03
CDY58272	Canola	cytosol, mitochondrion, plastid	7.77	25.89
CDX81222	Canola	cytosol, mitochondrion, plastid	7.77	25.89
CDY18714	Canola	endoplasmic reticulum, extracellular	8.31	24.03
CDY02979	Canola	mitochondrion	6.17	19.49
CDY41214	Canola	nucleus	9.38	18.42
CDY40236	Canola	nucleus	9.38	18.42
CDY31323	Canola	extracellular	6.43	18.18
CDY52281	Canola	cytosol	26.54	17.74
CDY15103	Canola	cytosol	26.54	17.74
CDY00831	Canola	cytosol	8.85	17.37
CDX86295	Canola	cytosol	26.27	17.1
CDX85348	Canola	cytosol	26.01	17.02
CDY15104	Canola	cytosol	12.06	16.25
CDX76177	Canola	cytosol	20.91	12.32
CDY07563	Canola	cytosol	21.18	12.31
CDY13167	Canola	cytosol	20.64	11.99
CDX67584	Canola	cytosol	20.64	11.86
CDY15096	Canola	cytosol	17.69	9.36
CDY00829	Canola	cytosol	8.85	9.24

Protein Annotations

Gene3D:1.25.40.10	MapMan:18.12.2	Gene3D:3.10.50.40	GO:A0A078CBT6	EnsemblPlants:CDX73664	ProteinID:CDX73664
ProteinID:CDX73664.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00109244001	InterPro:IPR001179
InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	PFAM:PF00254	PFAM:PF07719	InterPro:PPIase_FKBP
InterPro:PPIase_FKBP_dom	PFscan:PS50005	PFscan:PS50059	PFscan:PS50293	PANTHER:PTHR43811	PANTHER:PTHR43811:SF21
SMART:SM00028	SUPFAM:SSF48452	SUPFAM:SSF54534	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_2
InterPro:TPR_repeat	UniParc:UPI0004EF25A8	:	:	:	:

Description

BnaC08g23390D

Coordinates

chrLK031799:+:1999138..2001564

Molecular Weight (calculated)

42681.9 Da

IEP (calculated)

6.268

GRAVY (calculated)

-0.706

Length

373 amino acids

Sequence
(BLAST)

001: MDESLENQTQ TQTLDQENEI VTEGSAAVHG EPSQDGSVPP KVDSEVEVLD EKVSKQIIKE GHGSKPSKYS SCFLHYRAWT KHTQHKFEDT WQEQQPIELV
101: LGKEKKEMAG LAIGVSSMKS GERALLHIGW ELGYGKDGNF SFPNVPPMAD LLYEVEVIGF DETKEARWIV QGKARSDMTV EERIGAADRR KMDGNNLFKE
201: DKLEEAMQQY EMAIAYMGDD FMFQLYGKYQ DMALAVKNPC HLNMAACLIK LKRYDEAIGH CNIVLTEEEK TPKALFRRGK AKAELGQMDS AREDFRKAQK
301: YAPDDNAIRR ELRAIAEQEK AVYQKQKEMY KGMFVGREES GGKGKSRNWL IMLWQWMVSL FSRVFGRHRV KAD

Best Arabidopsis Sequence Match ( AT3G21640.1 )
(BLAST)

001: MDESLEHQTQ THDQESEIVT EGSAVVHSEP SQEGNVPPKV DSEAEVLDEK VSKQIIKEGH GSKPSKYSTC FLHYRAWTKN SQHKFEDTWH EQQPIELVLG
101: KEKKELAGLA IGVASMKSGE RALVHVGWEL AYGKEGNFSF PNVPPMADLL YEVEVIGFDE TKEGKARSDM TVEERIGAAD RRKMDGNSLF KEEKLEEAMQ
201: QYEMAIAYMG DDFMFQLYGK YQDMALAVKN PCHLNIAACL IKLKRYDEAI GHCNIVLTEE EKNPKALFRR GKAKAELGQM DSARDDFRKA QKYAPDDKAI
301: RRELRALAEQ EKALYQKQKE MYKGIFKGKD EGGAKSKSLF WLIVLWQWFV SLFSRIFRRH RVKAD

Arabidopsis Description

FKBP42Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178V6X3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.