CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 1
cytosol 3
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93519
KRG96023
KRH05968
KRH08858
KRH11151
KRH17450
KRH18485
KRH19897
KRH21096
KRH32507
KRH38373
KRH67730

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21640.1	KRH05968	AT1G27940.1	14517332
AT3G21640.1	KRH17450	AT1G27940.1	14517332
AT3G21640.1	KRH11151	AT2G34660.1	15133126
AT3G21640.1	KRH21096	AT2G34660.1	15133126
AT3G21640.1	KRG96023	AT2G36910.1	14517332
AT3G21640.1	KRH19897	AT2G36910.1	14517332
AT3G21640.1	KRH32507	AT2G36910.1	14517332
AT3G21640.1	KRH67730	AT2G36910.1	14517332
AT3G21640.1	KRG93519	AT3G28860.1	14517332
AT3G21640.1	KRH18485	AT3G28860.1	14517332
AT3G21640.1	KRH08858	AT5G52640.1	12410806
AT3G21640.1	KRH38373	AT5G52640.1	12410806

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH39924	Soybean	endoplasmic reticulum	96.22	96.22
VIT_13s0064g00580.t01	Wine grape	cytosol	80.81	81.92
CDY34049	Canola	cytosol	22.16	81.19
PGSC0003DMT400017681	Potato	cytosol	76.49	76.9
Solyc01g087470.2.1	Tomato	cytosol	67.03	76.31
AT3G21640.1	Thale cress	cytosol	72.7	73.7
Bra012823.1-P	Field mustard	cytosol	70.81	73.39
CDY29061	Canola	cytosol	70.81	73.39
Bra006895.1-P	Field mustard	cytosol	72.16	73.15
CDX78057	Canola	cytosol	69.46	72.6
GSMUA_Achr6P12690_001	Banana	cytosol	72.97	72.19
CDX73664	Canola	cytosol	72.7	72.12
EES07974	Sorghum	cytosol	71.08	71.47
Os12t0145500-01	Rice	cytosol	70.27	70.27
Zm00001d004930_P001	Maize	mitochondrion	70.27	69.52
CDX90622	Canola	cytosol	73.51	68.86
Os11t0148300-01	Rice	cytosol	68.92	68.0
TraesCS5A01G134500.3	Wheat	cytosol	67.57	67.75
TraesCS5B01G131200.1	Wheat	cytosol	67.57	67.57
TraesCS5D01G139000.1	Wheat	cytosol	67.57	67.57
CDY64639	Canola	endoplasmic reticulum, extracellular	47.57	65.67
HORVU5Hr1G041060.1	Barley	cytosol, plastid	67.03	58.35
KRH21780	Soybean	cytosol, mitochondrion, plastid	7.84	25.89
KRG95045	Soybean	cytosol	9.46	25.36
KRH10589	Soybean	cytosol	7.57	20.0
KRG97894	Soybean	cytosol	10.0	19.68
KRH30990	Soybean	cytosol	10.0	19.68
KRH42713	Soybean	cytosol	29.19	18.95
KRH58815	Soybean	peroxisome	29.19	18.95
KRH07424	Soybean	cytosol	27.57	17.77
KRH46622	Soybean	cytosol, nucleus	25.95	17.65
KRG99620	Soybean	cytosol	25.41	17.28
KRH66151	Soybean	nucleus	27.03	17.18
KRH66687	Soybean	cytosol	23.51	16.11
KRH75755	Soybean	cytosol, endoplasmic reticulum	24.86	14.79
KRH62430	Soybean	cytosol	24.86	14.79
KRG88759	Soybean	cytosol	22.16	14.09
KRH05556	Soybean	cytosol	22.16	14.07

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100790587	MapMan:18.12.2	Gene3D:3.10.50.40	UniProt:A0A0R4J4P0	EMBL:ACUP02007161
EnsemblPlantsGene:GLYMA_12G008300	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016853	GO:GO:0019538	InterPro:IPR001179	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR019734	EnsemblPlants:KRH23877	ProteinID:KRH23877	ProteinID:KRH23877.1	ProteinID:KRH23878.1
PFAM:PF00254	PFAM:PF13181	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50005	PFscan:PS50059
PFscan:PS50293	PANTHER:PTHR43811	PANTHER:PTHR43811:SF21	SMART:SM00028	SUPFAM:SSF48452	SUPFAM:SSF54534
TMHMM:TMhelix	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0001D16676	:

Description

hypothetical protein

Coordinates

chr12:+:613939..617457

Molecular Weight (calculated)

42264.4 Da

IEP (calculated)

5.992

GRAVY (calculated)

-0.629

Length

370 amino acids

Sequence
(BLAST)

001: MEEVQESQTQ SSLGQEEENE VITESSAFVK GEPAPEFSSN PPKVDSEVEV LHEKVSKQII KEGHGQKPSK YSTCFFHYRA WAEKSQHKFE DTWQEQRPIE
101: MVLGKEKKEM TGLGIGVASM KAGERALVRV GWELGYGEEG SFSFPNVPPK ADLVYEVELI GFDETKEGKA RSDMTVEERI GAADRRKMDG NALYQEEKLE
201: EAMQQYEMAI AYMGDDFMFQ LFGKYRDMAL AVKNPCHLNM AACLIKLNRY EEAIGQCSIV LGEDENNVKA LFRRGKARAA LGQTDTARED FLKASKYAPQ
301: DKAIAKELRL LAEHDKAVYQ KQKEIYKGIF GPRPQPVPKP RNWLILIWQW LLSVFYGLVT LFKRQRHKSD

Best Arabidopsis Sequence Match ( AT3G21640.1 )
(BLAST)

001: MDESLEHQTQ THDQESEIVT EGSAVVHSEP SQEGNVPPKV DSEAEVLDEK VSKQIIKEGH GSKPSKYSTC FLHYRAWTKN SQHKFEDTWH EQQPIELVLG
101: KEKKELAGLA IGVASMKSGE RALVHVGWEL AYGKEGNFSF PNVPPMADLL YEVEVIGFDE TKEGKARSDM TVEERIGAAD RRKMDGNSLF KEEKLEEAMQ
201: QYEMAIAYMG DDFMFQLYGK YQDMALAVKN PCHLNIAACL IKLKRYDEAI GHCNIVLTEE EKNPKALFRR GKAKAELGQM DSARDDFRKA QKYAPDDKAI
301: RRELRALAEQ EKALYQKQKE MYKGIFKGKD EGGAKSKSLF WLIVLWQWFV SLFSRIFRRH RVKAD

Arabidopsis Description

FKBP42Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178V6X3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.