CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH02749
KRH19119
KRH23877
KRH39071
KRH39924
KRH41847
KRH48642

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36910.1	KRH39071	AT1G73590.1	17237354
AT2G36910.1	KRH41847	AT1G73590.1	17237354
AT2G36910.1	KRH48642	AT1G73590.1	17237354
AT2G36910.1	KRH23877	AT3G21640.1	14517332
AT2G36910.1	KRH39924	AT3G21640.1	14517332
AT2G36910.1	KRH02749	AT5G57090.1	17237354
AT2G36910.1	KRH19119	AT5G57090.1	17237354

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67730	Soybean	cytosol, peroxisome, plasma membrane	97.31	97.09
KRH32507	Soybean	cytosol, nucleus, plasma membrane	91.04	90.77
KRH19897	Soybean	cytosol, peroxisome, plasma membrane	90.07	89.93
AT2G36910.1	Thale cress	peroxisome	85.14	88.65
CDY46744	Canola	cytosol, peroxisome, plasma membrane	86.33	86.4
Bra023087.1-P	Field mustard	cytosol, nucleus, plasma membrane	86.33	86.33
VIT_08s0007g05060.t01	Wine grape	cytosol, peroxisome, plasma membrane	87.23	86.26
CDX79704	Canola	plasma membrane	85.96	85.83
Bra017216.1-P	Field mustard	cytosol, nucleus, plasma membrane	85.29	85.35
Solyc09g008240.2.1	Tomato	peroxisome	83.2	84.78
PGSC0003DMT400009924	Potato	peroxisome	84.32	84.7
TraesCS7A01G284900.1	Wheat	plasma membrane	73.71	79.21
GSMUA_Achr4P12130_001	Banana	cytosol	76.4	75.95
GSMUA_Achr4P04430_001	Banana	cytosol, peroxisome, plasma membrane	75.35	74.46
TraesCS7B01G181700.1	Wheat	cytosol	75.06	73.46
TraesCS7D01G284100.1	Wheat	cytosol	75.43	73.45
Os08t0564300-04	Rice	plasma membrane	73.19	72.92
HORVU7Hr1G063020.3	Barley	cytosol	75.06	71.23
Zm00001d031871_P001	Maize	cytosol	74.46	70.41
OQU80682	Sorghum	plasma membrane	72.96	63.4
KRH18485	Soybean	endoplasmic reticulum, mitochondrion	50.63	54.28
KRG93519	Soybean	cytosol, peroxisome, plasma membrane	50.26	53.84
KRH45417	Soybean	plasma membrane	46.38	49.52
KRH39563	Soybean	peroxisome	45.78	49.24
KRH74394	Soybean	plasma membrane	45.48	48.88
KRH17450	Soybean	plasma membrane	44.96	48.16
KRH05968	Soybean	plasma membrane	44.88	48.08
KRH11119	Soybean	plasma membrane	41.75	44.83
KRH02481	Soybean	plasma membrane	42.12	44.24
KRH19486	Soybean	cytosol, peroxisome, plasma membrane	41.82	43.96
KRH69152	Soybean	cytosol, peroxisome, plasma membrane	41.75	43.6
KRH21125	Soybean	plasma membrane	41.0	43.54
KRH33644	Soybean	cytosol, peroxisome, plasma membrane	41.37	43.21
KRH68334	Soybean	cytosol, peroxisome, plasma membrane	40.48	42.24
KRH02482	Soybean	cytosol, peroxisome, plasma membrane	40.1	41.21
KRH53669	Soybean	plasma membrane	38.16	40.75
KRH19480	Soybean	plasma membrane	36.67	40.71
KRH02484	Soybean	plasma membrane	37.42	39.57
KRH19479	Soybean	plasma membrane	37.94	39.11
KRG92957	Soybean	nucleus	40.03	38.31
KRH70512	Soybean	extracellular	40.1	38.3
KRH01590	Soybean	mitochondrion	39.88	38.09
KRH36206	Soybean	cytosol, golgi, plastid	39.73	38.03
KRH06234	Soybean	peroxisome, plastid	38.69	34.19

Protein Annotations

Gene3D:1.20.1560.10	EntrezGene:100814667	MapMan:24.1.3.1.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC1_TM_dom
InterPro:ABC1_TM_sf	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	EMBL:ACUP02012142	EnsemblPlantsGene:GLYMA_19G184300	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887
GO:GO:0042626	GO:GO:0055085	UniProt:I1NAB2	InterPro:IPR003439	InterPro:IPR011527	InterPro:IPR036640
EnsemblPlants:KRG96023	ProteinID:KRG96023	ProteinID:KRG96023.1	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF00664
ScanProsite:PS00211	PFscan:PS50893	PFscan:PS50929	PANTHER:PTHR24221	PANTHER:PTHR24221:SF384	SMART:SM00382
SUPFAM:SSF52540	SUPFAM:SSF90123	TMHMM:TMhelix	UniParc:UPI000233F475	SEG:seg	:

Description

hypothetical protein

Coordinates

chr19:-:44281760..44288919

Molecular Weight (calculated)

146330.0 Da

IEP (calculated)

7.676

GRAVY (calculated)

0.018

Length

1339 amino acids

Sequence
(BLAST)

0001: MSKDSEEIKT IEQWKWSEMQ GLELVPEEGG AAAPSQHQVP REMNTSEPPN KDVGASSAAV TSNGGGEKKE KESVPSVGFG ELFRFADGLD YVLMGIGTVG
0101: AVVHGCSLPL FLRFFADLVN SFGSNANDVD KMTQEVVKYA FYFLVVGAAI WASSWAEISC WMWSGERQST KMRIKYLEAA LNQDIQFFDT EVRTSDVVFA
0201: INTDAVMVQD AISEKLGNFI HYMATFVSGF VVGFTAVWQL ALVTLAVVPM IAVIGGIHTT TLAKLSGKSQ EALSQAGNIV EQTIAQIRVV LAFVGESRAL
0301: QAYSSALRVA QKIGYKTGFA KGMGLGATYF VVFCCYALLL WYGGYLVRHH ATNGGLAIAT MFAVMIGGLG LGQSAPSMAA FTKARVAAAK IFRIIDHKPS
0401: IDQNSESGVE LDTVTGLVEL KNVDFSYPSR PEVQILNDFS LNVPAGKTIA LVGSSGSGKS TVVSLIERFY DPTSGQVLLD GHDIKTLRLR WLRQQIGLVS
0501: QEPALFATTI RENILLGRPD ADQVEIEEAA RVANAHSFII KLPDGYETQV GERGLQLSGG QKQRIAIARA MLKNPAILLL DEATSALDSE SEKLVQEALD
0601: RFMIGRTTLI IAHRLSTIRK ADLVAVLQQG SVSEIGTHDE LFSKGENGVY AKLIKMQEMA HETAMNNARK SSARPSSARN SVSSPIIARN SSYGRSPYSR
0701: RLSDFSTSDF SLSLDASHPS YRLEKLAFKE QASSFWRLAK MNSPEWLYAL IGSIGSVVCG SLSAFFAYVL SAVLSVYYNP DHRYMIREIE KYCYLLIGLS
0801: STALLFNTLQ HFFWDIVGEN LTKRVREKML TAVLKNEMAW FDQEENESAR IAARLALDAN NVRSAIGDRI SVIVQNTALM LVACTAGFVL QWRLALVLVA
0901: VFPVVVAATV LQKMFMTGFS GDLEAAHAKA TQLAGEAIAN VRTVAAFNSE KKIVGLFTTN LQAPLQRCFW KGQISGSGYG VAQFALYASY ALGLWYASWL
1001: VKHGISDFSK TIRVFMVLMV SANGAAETLT LAPDFIKGGR AMRSVFDLLD RRTEIEPDDQ DATPVPDRLR GEVELKHVDF SYPTRPDMPV FRDLSLRAKA
1101: GKTLALVGPS GCGKSSVIAL IQRFYDPTSG RVMIDGKDIR KYNLKSLRRH ISVVPQEPCL FATTIYENIA YGHESTTEAE IIEAATLANA HKFISGLPDG
1201: YKTFVGERGV QLSGGQKQRI AVARAFVRKA ELMLLDEATS ALDAESERSV QEALDRASSG KTTIIVAHRL STIRNANLIA VIDDGKVAEQ GSHSQLLKNH
1301: PDGIYARMIQ LQRFTHSQVI GMASGSSSST RPKDDEREG

Best Arabidopsis Sequence Match ( AT2G36910.1 )
(BLAST)

0001: MDNDGGAPPP PPTLVVEEPK KAEIRGVAFK ELFRFADGLD YVLMGIGSVG AFVHGCSLPL FLRFFADLVN SFGSNSNNVE KMMEEVLKYA LYFLVVGAAI
0101: WASSWAEISC WMWSGERQTT KMRIKYLEAA LNQDIQFFDT EVRTSDVVFA INTDAVMVQD AISEKLGNFI HYMATFVSGF IVGFTAVWQL ALVTLAVVPL
0201: IAVIGGIHTT TLSKLSNKSQ ESLSQAGNIV EQTVVQIRVV MAFVGESRAS QAYSSALKIA QKLGYKTGLA KGMGLGATYF VVFCCYALLL WYGGYLVRHH
0301: LTNGGLAIAT MFAVMIGGLA LGQSAPSMAA FAKAKVAAAK IFRIIDHKPT IERNSESGVE LDSVTGLVEL KNVDFSYPSR PDVKILNNFC LSVPAGKTIA
0401: LVGSSGSGKS TVVSLIERFY DPNSGQVLLD GQDLKTLKLR WLRQQIGLVS QEPALFATSI KENILLGRPD ADQVEIEEAA RVANAHSFII KLPDGFDTQV
0501: GERGLQLSGG QKQRIAIARA MLKNPAILLL DEATSALDSE SEKLVQEALD RFMIGRTTLI IAHRLSTIRK ADLVAVLQQG SVSEIGTHDE LFSKGENGVY
0601: AKLIKMQEAA HETAMSNARK SSARPSSARN SVSSPIMTRN SSYGRSPYSR RLSDFSTSDF SLSIDASSYP NYRNEKLAFK DQANSFWRLA KMNSPEWKYA
0701: LLGSVGSVIC GSLSAFFAYV LSAVLSVYYN PDHEYMIKQI DKYCYLLIGL SSAALVFNTL QHSFWDIVGE NLTKRVREKM LSAVLKNEMA WFDQEENESA
0801: RIAARLALDA NNVRSAIGDR ISVIVQNTAL MLVACTAGFV LQWRLALVLV AVFPVVVAAT VLQKMFMTGF SGDLEAAHAK GTQLAGEAIA NVRTVAAFNS
0901: EAKIVRLYTA NLEPPLKRCF WKGQIAGSGY GVAQFCLYAS YALGLWYASW LVKHGISDFS KTIRVFMVLM VSANGAAETL TLAPDFIKGG QAMRSVFELL
1001: DRKTEIEPDD PDTTPVPDRL RGEVELKHID FSYPSRPDIQ IFRDLSLRAR AGKTLALVGP SGCGKSSVIS LIQRFYEPSS GRVMIDGKDI RKYNLKAIRK
1101: HIAIVPQEPC LFGTTIYENI AYGHECATEA EIIQAATLAS AHKFISALPE GYKTYVGERG VQLSGGQKQR IAIARALVRK AEIMLLDEAT SALDAESERS
1201: VQEALDQACS GRTSIVVAHR LSTIRNAHVI AVIDDGKVAE QGSHSHLLKN HPDGIYARMI QLQRFTHTQV IGMTSGSSSR VKEDDA

Arabidopsis Description

ABCB1ABC transporter B family member 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR72]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.