CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
mitochondrion 2
plasma membrane 1
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36206	Soybean	cytosol, golgi, plastid	98.36	98.36
KRH70512	Soybean	extracellular	90.49	90.3
KRH01590	Soybean	mitochondrion	89.99	89.8
VIT_13s0019g00310.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	82.13	88.38
Solyc04g010310.2.1	Tomato	plasma membrane	80.41	87.55
HORVU3Hr1G117250.1	Barley	mitochondrion	6.93	87.39
GSMUA_Achr3P17720_001	Banana	peroxisome	76.7	85.7
AT3G55320.1	Thale cress	cytosol, peroxisome, plasma membrane	85.49	84.94
AT2G39480.1	Thale cress	cytosol, mitochondrion, plasma membrane	85.2	84.72
CDY20443	Canola	cytosol, mitochondrion, plasma membrane	84.77	84.65
CDY24958	Canola	mitochondrion, plasma membrane, plastid	84.27	84.52
CDY53591	Canola	cytosol, mitochondrion, plasma membrane	84.99	84.45
Bra005036.1-P	Field mustard	mitochondrion	84.92	84.38
CDY65312	Canola	cytosol	84.35	84.35
CDX76106	Canola	cytosol, golgi, peroxisome	84.35	84.29
Bra014756.1-P	Field mustard	cytosol, golgi, peroxisome	84.27	84.21
CDY07647	Canola	cytosol	83.99	83.87
Bra000136.1-P	Field mustard	cytosol, mitochondrion, peroxisome	84.06	83.82
KXG34231	Sorghum	cytosol, plasma membrane, vacuole	80.27	80.16
TraesCS3A01G536300.1	Wheat	cytosol, plasma membrane, vacuole	80.13	80.01
Os03t0280000-01	Rice	plasma membrane	80.63	79.94
TraesCS3D01G541700.1	Wheat	cytosol, plasma membrane, vacuole	80.2	79.74
TraesCS3B01G607600.1	Wheat	cytosol, plasma membrane, vacuole	79.99	79.36
EER92449	Sorghum	plasma membrane	79.91	79.12
Zm00001d028671_P002	Maize	cytosol, plasma membrane, vacuole	78.98	78.98
Zm00001d041947_P001	Maize	cytosol, peroxisome, plasma membrane	79.2	78.86
TraesCS4A01G101600.3	Wheat	cytosol, plasma membrane, plastid	79.41	78.85
TraesCS4B01G203000.1	Wheat	cytosol, plasma membrane, plastid	79.27	78.71
Zm00001d047780_P002	Maize	plasma membrane	79.49	78.7
TraesCS4D01G203900.2	Wheat	cytosol, plasma membrane, plastid	79.13	78.57
KRH18485	Soybean	endoplasmic reticulum, mitochondrion	38.03	42.59
KRG93519	Soybean	cytosol, peroxisome, plasma membrane	37.96	42.48
KRH05968	Soybean	plasma membrane	37.31	41.76
KRH17450	Soybean	plasma membrane	37.24	41.68
KRH45417	Soybean	plasma membrane	37.24	41.55
KRH39563	Soybean	peroxisome	36.67	41.2
KRH74394	Soybean	plasma membrane	36.45	40.93
KRH21125	Soybean	plasma membrane	36.38	40.36
KRH67730	Soybean	cytosol, peroxisome, plasma membrane	38.67	40.31
KRG96023	Soybean	cytosol, peroxisome, plasma membrane	38.31	40.03
KRH32507	Soybean	cytosol, nucleus, plasma membrane	38.31	39.91
KRH19897	Soybean	cytosol, peroxisome, plasma membrane	38.24	39.9
KRH69152	Soybean	cytosol, peroxisome, plasma membrane	36.03	39.31
KRH19486	Soybean	cytosol, peroxisome, plasma membrane	35.45	38.93
KRH11119	Soybean	plasma membrane	34.67	38.89
KRH33644	Soybean	cytosol, peroxisome, plasma membrane	35.53	38.77
KRH02481	Soybean	plasma membrane	34.38	37.73
KRH02484	Soybean	plasma membrane	34.02	37.6
KRH68334	Soybean	cytosol, peroxisome, plasma membrane	34.1	37.18
KRH19480	Soybean	plasma membrane	31.74	36.82
KRH02482	Soybean	cytosol, peroxisome, plasma membrane	34.1	36.61
KRH19479	Soybean	plasma membrane	33.95	36.57
KRH53669	Soybean	plasma membrane	31.59	35.25
KRH06234	Soybean	peroxisome, plastid	32.17	29.7

Protein Annotations

Gene3D:1.20.1560.10	EntrezGene:100799399	MapMan:24.1.3.1.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC1_TM_dom
InterPro:ABC1_TM_sf	InterPro:ABC_transporter-like	EMBL:ACUP02012773	ncoils:Coil	EnsemblPlantsGene:GLYMA_20G239800	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887
GO:GO:0042626	GO:GO:0055085	UniProt:I1NJ54	InterPro:IPR003439	InterPro:IPR011527	InterPro:IPR036640
EnsemblPlants:KRG92957	ProteinID:KRG92957	ProteinID:KRG92957.1	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF00664
PFscan:PS50893	PFscan:PS50929	PANTHER:PTHR24222	PANTHER:PTHR24222:SF21	SMART:SM00382	SUPFAM:SSF52540
SUPFAM:SSF90123	TMHMM:TMhelix	UniParc:UPI000233DE23	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr20:-:47117869..47128044

Molecular Weight (calculated)

155195.0 Da

IEP (calculated)

6.421

GRAVY (calculated)

0.079

Length

1399 amino acids

Sequence
(BLAST)

0001: MMGSRGLFGW SPPHIQPLTP VSEVSEPPES PSPYLDLGAE TSATQPMEVE EEMEEADEIE PPPAAVPFSR LFACADHLDW FLMLVGSIAA AAHGTALVVY
0101: LHYFAKVLRV PQQGLPEEQF HRFKELALTI VYIAGGVFAA GWIEVSCWIL TGERQTAVIR SKYVQVLLNQ DMSFFDTYGN NGDIVSQVLS DVLLIQSALS
0201: EKVGNYIHNM ATFFSGLVIA FINCWQIALI TLATGPFIVA AGGISNIFLH RLAENIQDAY AEAASIAEQA VSYIRTLYAF TNETLAKYSY ATSLQATLRY
0301: GILISLVQGL GLGFTYGLAI CSCALQLWVG RLLIIHGKAH GGEIITALFA VILSGLGLNQ AATNFYSFDQ GRIAAYRLFE MISRSSSSFN HDGSAPASVQ
0401: GNIEFRNVYF SYLSRPEIPI LSGFYLTVPA KKTVALVGRN GSGKSSIIPL MERFYDPTLG EVLLDGENIK NMKLEWLRNQ IGLVTQEPAL LSLSIRDNIA
0501: YGRDTTMDQI EEAAKIAHAH TFISSLDKGY DTQVGRAGLA LTEEQKIKLS IARAVLLNPS ILLLDEVTGG LDFEAERSVQ EALDLLMLGR STIIIARRLS
0601: LIKNADYIAV MEDGQLVEMG THDELLTLDG LYAELLRCEE ATKLPKRMPV RNYKETATFQ IEKDSSESHS FKEPSSPKMI KSPSLQRVSA IFRPSDGFFN
0701: SQESPKIRSP PSEKLMENGQ SLDSSDKEPS IKRQDSFEMR LPELPKIDVQ CVHRQTSNGS DPESPISPLL TSDPKNERSH SQTFSRPDCH SDDLLVKMSE
0801: TKDARHRKQP SIWRLAELSF AEWLYAVLGS IGAAIFGSFN PLLAYVIGLV VTDYYRIDEA QHLQGEINKW CLIIACMGIV TVVANFLQHF YFGIMGEKMT
0901: ERVRRMMFSA MLRNETGWFD EEENSADNLS MRLANDATFV RAAFSNRLSI FIQDSAAVIV AFLIGVLLHW RLALVALATL PVLCVSALAQ KLWLAGFSKG
1001: IQEMHRKASL VLEDAVRNIY TVVAFCAGNK VMELYQLQLN KIFKQSFLHG VAIGFGFGFS QFLLFACNAL LLWYTALCVN KSYVDLPTAL KEYIVFSFAT
1101: FALVEPFGLA PYILKRRKSL MSVFEIIDRV PKIDPDDSSA LKPPNVYGSI ELKNIDFCYP SRPEVLVLSN FSLKVNGGQT IAVVGVSGSG KSTIISLIER
1201: FYDPVAGQVL LDGRDLKQYN LRWLRSHLGL VQQEPIIFST TIRENIIYAR HNASEAEMKE AARIANAHHF ISSLPHGYDT HVGMRGVDLT PGQKQRIAIA
1301: RVVLKNAPIL LLDEASSSIE SESSRVVQEA LDTLIMGNKT TILIAHRAAM MRHVDNIVVL NGGRIVEEGT HDSLVAKNGL YVRLMQPHFG KALRQHRLV

Best Arabidopsis Sequence Match ( AT3G55320.1 )
(BLAST)

0001: MMISRGLFGW SPPHMQPLTP VSEVSEPPES PSPYLDPGAE SGGGTGTAAA LAEADEEMDD QDELEPPPAA VPFSQLFACA DRFDWVLMIV GSVAAAAHGT
0101: ALIVYLHYFA KIVDVLAFSN DSSQQRSEHQ FDRLVQLSLT IVYIAGGVFI SGWIEVSCWI LTGERQTAVI RSKYVQVLLN QDMSFFDTYG NNGDIVSQVL
0201: SDVLLIQSAL SEKVGNYIHN MATFISGLVI GFVNCWEIAL ITLATGPFIV AAGGISNIFL HRLAENIQDA YAEAAGIAEQ AISYIRTLYA FTNETLAKYS
0301: YATSLQATLR YGILISLVQG LGLGFTYGLA ICSCALQLWI GRFFVHNGRA NGGEIIAALF AVILSGLGLN QAATNFYSFD QGRIAAYRLF EMITRSSSVA
0401: NQEGAVLASV QGNIEFRNVY FSYLSRPEIP ILSGFYLTVP AKKAVALVGR NGSGKSSIIP LMERFYDPTL GEVLLDGENI KNLKLEWLRS QIGLVTQEPA
0501: LLSLSIRENI AYGRDATLDQ IEEAAKNAHA HTFISSLEKG YETQVGRAGL AMTEEQKIKL SIARAVLLNP TILLLDEVTG GLDFEAERIV QEALDLLMLG
0601: RSTIIIARRL SLIKNADYIA VMEEGQLVEM GTHDELINLG GLYAELLKCE EATKLPRRMP VRNYKESAVF EVERDSSAGC GVQEPSSPKM IKSPSLQRGS
0701: GVFRPQELCF DTEESPKAHS PASEKTGEDG MSLDCADKEP TIKRQDSFEM RLPHLPKVDV QCPQQKSNGS EPESPVSPLL TSDPKNERSH SQTFSRPLSS
0801: PDDTKANGKA SKDAQHKESP SFWRLAQLSF PEWLYAVLGS LGAAIFGSFN PLLAYVIALV VTEYYKSKGG HLREEVDKWC LIIACMGIVT VVANFLQHFY
0901: FGIMGEKMTE RVRRMMFSAM LRNEVGWFDD EENSPDTLSM RLANDATFVR AAFSNRLSIF IQDSFAVIVA LLIGLLLGWR LALVALATLP ILTLSAIAQK
1001: LWLAGFSKGI QEMHRKASLV LEDAVRNIYT VVAFCAGNKV MELYRMQLQR ILRQSYLHGM AIGFAFGFSQ FLLFACNALL LWCTALSVNR GYMKLSTAIT
1101: EYMVFSFATF ALVEPFGLAP YILKRRKSLI SVFEIVDRVP TIEPDDNSAL KPPNVYGSIE LKNVDFCYPT RPEILVLSNF SLKISGGQTV AVVGVSGSGK
1201: STIISLVERY YDPVAGQVLL DGRDLKLYNL RWLRSHMGLV QQEPIIFSTT IRENIIYARH NASEAEMKEA ARIANAHHFI SSLPHGYDTH IGMRGVELTP
1301: GQKQRIAIAR VVLKNAPIIL IDEASSSIES ESSRVVQEAL DTLIMGNKTT ILIAHRAAMM RHVDNIVVLN GGRIVEEGTH DSLAAKNGLY VRLMQPHFGK
1401: GLRQHRLI

Arabidopsis Description

ABCB20ABC transporter B family member 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9M3B9]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.