Factsheet for Zm00001d028671_P002

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, vacuole, cytosol

Predictor Summary:

cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, vacuole
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92449	Sorghum	plasma membrane	97.28	96.32
Zm00001d047780_P002	Maize	plasma membrane	96.71	95.75
Os03t0280000-01	Rice	plasma membrane	94.14	93.34
TraesCS4A01G101600.3	Wheat	cytosol, plasma membrane, plastid	93.5	92.83
TraesCS4D01G203900.2	Wheat	cytosol, plasma membrane, plastid	93.28	92.62
HORVU4Hr1G058580.2	Barley	cytosol, plasma membrane, plastid	93.28	92.62
TraesCS4B01G203000.1	Wheat	cytosol, plasma membrane, plastid	93.21	92.55
GSMUA_Achr3P17720_001	Banana	peroxisome	75.55	84.42
Solyc04g010310.2.1	Tomato	plasma membrane	73.98	80.54
VIT_13s0019g00310.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	74.7	80.38
Zm00001d041947_P001	Maize	cytosol, peroxisome, plasma membrane	80.41	80.07
KRG92957	Soybean	nucleus	78.98	78.98
KRH36206	Soybean	cytosol, golgi, plastid	78.91	78.91
KRH70512	Soybean	extracellular	78.41	78.25
KRH01590	Soybean	mitochondrion	78.27	78.1
CDY24958	Canola	mitochondrion, plasma membrane, plastid	77.13	77.35
CDY20443	Canola	cytosol, mitochondrion, plasma membrane	77.2	77.09
AT3G55320.1	Thale cress	cytosol, peroxisome, plasma membrane	77.56	77.06
AT2G39480.1	Thale cress	cytosol, mitochondrion, plasma membrane	77.2	76.76
CDY07647	Canola	cytosol	76.77	76.66
CDY53591	Canola	cytosol, mitochondrion, plasma membrane	77.13	76.63
CDY65312	Canola	cytosol	76.63	76.63
Bra000136.1-P	Field mustard	cytosol, mitochondrion, peroxisome	76.77	76.55
CDX76106	Canola	cytosol, golgi, peroxisome	76.55	76.5
Bra014756.1-P	Field mustard	cytosol, golgi, peroxisome	76.48	76.43
Bra005036.1-P	Field mustard	mitochondrion	76.91	76.42
VIT_06s0004g04100.t01	Wine grape	cytosol	76.55	76.23
Zm00001d026426_P005	Maize	cytosol	38.88	42.73
Zm00001d002119_P006	Maize	cytosol	38.53	42.58
Zm00001d025590_P002	Maize	cytosol, nucleus, plasma membrane	38.31	42.11
Zm00001d051514_P002	Maize	mitochondrion	37.53	41.6
Zm00001d053706_P002	Maize	mitochondrion, plasma membrane	34.6	38.94
Zm00001d008178_P001	Maize	cytosol, peroxisome, plasma membrane, plastid	34.74	38.03
Zm00001d031871_P001	Maize	cytosol	38.38	37.92
Zm00001d016794_P001	Maize	plasma membrane	33.81	37.66
Zm00001d009448_P001	Maize	cytosol, peroxisome, plasma membrane	33.95	37.58
Zm00001d009447_P002	Maize	plasma membrane	33.88	37.5
Zm00001d011644_P002	Maize	plasma membrane	34.38	37.43
Zm00001d043762_P001	Maize	cytosol	33.88	37.23
Zm00001d005528_P001	Maize	plasma membrane	31.24	36.33
Zm00001d040562_P002	Maize	cytosol, peroxisome, plasma membrane	34.6	36.25
Zm00001d024600_P002	Maize	peroxisome	32.24	35.71
Zm00001d043766_P005	Maize	cytosol	32.24	35.29
Zm00001d044564_P008	Maize	cytosol, peroxisome, plasma membrane	33.17	35.07
Zm00001d049565_P001	Maize	peroxisome	30.38	33.62
Zm00001d004442_P001	Maize	plastid	30.88	28.48

Protein Annotations

Gene3D:1.20.1560.10	MapMan:24.1.3.1.1	Gene3D:3.40.50.300	UniProt:A0A1D6JYG8	InterPro:AAA+_ATPase	InterPro:ABC1_TM_dom
InterPro:ABC1_TM_sf	InterPro:ABC_transporter-like	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0055085
InterPro:IPR003439	InterPro:IPR011527	InterPro:IPR036640	ProteinID:ONL96703.1	InterPro:P-loop_NTPase	PFAM:PF00005
PFAM:PF00664	PFscan:PS50893	PFscan:PS50929	PANTHER:PTHR24222	PANTHER:PTHR24222:SF27	SMART:SM00382
SUPFAM:SSF52540	SUPFAM:SSF90123	TMHMM:TMhelix	UniParc:UPI00084569AA	EnsemblPlantsGene:Zm00001d028671	EnsemblPlants:Zm00001d028671_P002
EnsemblPlants:Zm00001d028671_T002	SEG:seg	:	:	:	:

Description

ABC transporter B family member 6

Coordinates

chr1:-:42457173..42465770

Molecular Weight (calculated)

154268.0 Da

IEP (calculated)

6.279

GRAVY (calculated)

0.052

Length

1399 amino acids

Sequence
(BLAST)

0001: MVPSGLFGWA SPHVQPLTPV SEVSEPPESP SPYGDGPAGD AGVGTREGEG AGAGEEEVED DEVEPPPAAV SFWRLFEFAD GVDWALMAAG ALAAAAHGAA
0101: LVVYLHYFGR ALNLLDSERH ALYIVFIAAG VFVAGWIGNS VEVSCWILTG ERQTAVIRSK YVQVLLNQDM SFFDTYGNNG DIVSQVLSDV LLIQSAISEK
0201: VGNYIHNMAT FVVGLIVGLL NCWQIALLTL ATGPLIVAAG GISNIFLHRL AENIQDAYAE AASIAEQAIL YIRTLYAFTN ETLAKYSYAT SLQATLRYGI
0301: LISLVQGIGL GFTYGLAICS CALQLWVGRH LIHRGKADGG EVVVALFSVI LSGLGLNQAA TNFYSFEQGR IAAYRLYEMI SRSTSSTNQE GATLPQVQGN
0401: IEFRNVYFSY LSRPEIPILS GFFLTVPARK TVALVGRNGS GKSSIIPLME RFYDPTLGEV LLDGENIKNL KVEWLRSQIG LVTQEPALLS LSIRENIAYG
0501: RSGTFDQIEE AAKTAHAHGF ISSLEKGYET QVGLAGVALT DEQKIKISIA RAVLSNPSIL LLDEVTGGLD FEAEKAVQEA LDVLMLGRST IIIARRLCLI
0601: KNADYIAVME EGHLVEMGTH DELLNLDGLY AELLRCEEAT KLPKRMPTKN SRERKSLQAE DTSVSQYFQE SSSPKMAKSP SLQRTHGMLQ FWRSDTNRNS
0701: HDSPKDPSPP SEQTIDNGIP MVAIETERTP SIKRQDSFEM KLPDLPKVDV HRIQRQSSKN SDPDSPISPL LTSDPKNERS HSQTFSRPQS ERDDTSSEHS
0801: ELDEVQHQKP PSFWRLATLS IAEWPYALLG TIGAAVFGSF NPLLAYTIAL IVSAYYQIEI RDMRHEVNRW CLFIVGMGVI TVLVNWLQHF YFGIMGEKMT
0901: ERIRRMMFSA MLRNEIGWFD KEENNADTLS LRLANDATFV RAAFSNRLSI FIQDTAAVSV ALLIGILLGW RVALVALATL PVLVISAIAQ KLWLAGFSRG
1001: IQEMHRKASL VLEDAVRNIY TVVAFCAGDK IMELYRLHLG KILKQSLVQG LAIGFGFGLS QFLLFACNAL LLWYTAISVD KQHLTIATGL KEYILFSFAS
1101: FALVEPFGLA PYILKRRKSL TSVFEIIDRE PRIDPDDTTG LKPPNVYGSI EFKSVDFSYP ARPDILVLSN FNLKVSGGQT VAVVGVLGSG KSTLISLIER
1201: FYDPVAGQVL LDGRDMKSFN LRWLRSHMGL IQQDPVIFST TIRENIIYAR HNATEAEMKE AARIANAHHF ISSLPHGYDT HVGMRGVDLT PGQKQRIAIA
1301: RVVLKNAPIL LLDEASSAIE SESSRVVQEA LDTLVMGNKT TILIAHRAAM MKHVDNIVVL NGGRIVEQGT HDSLMDQNGL YVRLMQPHFG KGLRQHRLM

Best Arabidopsis Sequence Match ( AT3G55320.1 )
(BLAST)

0001: MMISRGLFGW SPPHMQPLTP VSEVSEPPES PSPYLDPGAE SGGGTGTAAA LAEADEEMDD QDELEPPPAA VPFSQLFACA DRFDWVLMIV GSVAAAAHGT
0101: ALIVYLHYFA KIVDVLAFSN DSSQQRSEHQ FDRLVQLSLT IVYIAGGVFI SGWIEVSCWI LTGERQTAVI RSKYVQVLLN QDMSFFDTYG NNGDIVSQVL
0201: SDVLLIQSAL SEKVGNYIHN MATFISGLVI GFVNCWEIAL ITLATGPFIV AAGGISNIFL HRLAENIQDA YAEAAGIAEQ AISYIRTLYA FTNETLAKYS
0301: YATSLQATLR YGILISLVQG LGLGFTYGLA ICSCALQLWI GRFFVHNGRA NGGEIIAALF AVILSGLGLN QAATNFYSFD QGRIAAYRLF EMITRSSSVA
0401: NQEGAVLASV QGNIEFRNVY FSYLSRPEIP ILSGFYLTVP AKKAVALVGR NGSGKSSIIP LMERFYDPTL GEVLLDGENI KNLKLEWLRS QIGLVTQEPA
0501: LLSLSIRENI AYGRDATLDQ IEEAAKNAHA HTFISSLEKG YETQVGRAGL AMTEEQKIKL SIARAVLLNP TILLLDEVTG GLDFEAERIV QEALDLLMLG
0601: RSTIIIARRL SLIKNADYIA VMEEGQLVEM GTHDELINLG GLYAELLKCE EATKLPRRMP VRNYKESAVF EVERDSSAGC GVQEPSSPKM IKSPSLQRGS
0701: GVFRPQELCF DTEESPKAHS PASEKTGEDG MSLDCADKEP TIKRQDSFEM RLPHLPKVDV QCPQQKSNGS EPESPVSPLL TSDPKNERSH SQTFSRPLSS
0801: PDDTKANGKA SKDAQHKESP SFWRLAQLSF PEWLYAVLGS LGAAIFGSFN PLLAYVIALV VTEYYKSKGG HLREEVDKWC LIIACMGIVT VVANFLQHFY
0901: FGIMGEKMTE RVRRMMFSAM LRNEVGWFDD EENSPDTLSM RLANDATFVR AAFSNRLSIF IQDSFAVIVA LLIGLLLGWR LALVALATLP ILTLSAIAQK
1001: LWLAGFSKGI QEMHRKASLV LEDAVRNIYT VVAFCAGNKV MELYRMQLQR ILRQSYLHGM AIGFAFGFSQ FLLFACNALL LWCTALSVNR GYMKLSTAIT
1101: EYMVFSFATF ALVEPFGLAP YILKRRKSLI SVFEIVDRVP TIEPDDNSAL KPPNVYGSIE LKNVDFCYPT RPEILVLSNF SLKISGGQTV AVVGVSGSGK
1201: STIISLVERY YDPVAGQVLL DGRDLKLYNL RWLRSHMGLV QQEPIIFSTT IRENIIYARH NASEAEMKEA ARIANAHHFI SSLPHGYDTH IGMRGVELTP
1301: GQKQRIAIAR VVLKNAPIIL IDEASSSIES ESSRVVQEAL DTLIMGNKTT ILIAHRAAMM RHVDNIVVLN GGRIVEEGTH DSLAAKNGLY VRLMQPHFGK
1401: GLRQHRLI

Arabidopsis Description

ABCB20ABC transporter B family member 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9M3B9]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.