Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- plasma membrane 1
- mitochondrion 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G117250.1 | Barley | mitochondrion | 6.98 | 88.29 |
| GSMUA_Achr3P17720_001 | Banana | peroxisome | 75.59 | 84.82 |
| VIT_13s0019g00310.t01 | Wine grape | endoplasmic reticulum, golgi, plasma membrane | 77.37 | 83.62 |
| KXG34231 | Sorghum | cytosol, plasma membrane, vacuole | 79.0 | 79.23 |
| TraesCS3A01G536300.1 | Wheat | cytosol, plasma membrane, vacuole | 78.29 | 78.52 |
| TraesCS3D01G541700.1 | Wheat | cytosol, plasma membrane, vacuole | 78.29 | 78.18 |
| TraesCS3B01G607600.1 | Wheat | cytosol, plasma membrane, vacuole | 78.15 | 77.87 |
| Zm00001d041947_P001 | Maize | cytosol, peroxisome, plasma membrane | 77.51 | 77.51 |
| Os03t0280000-01 | Rice | plasma membrane | 77.3 | 76.97 |
| EER92449 | Sorghum | plasma membrane | 77.22 | 76.79 |
| Zm00001d028671_P002 | Maize | cytosol, plasma membrane, vacuole | 76.23 | 76.55 |
| TraesCS4A01G101600.3 | Wheat | cytosol, plasma membrane, plastid | 76.73 | 76.51 |
| TraesCS4B01G203000.1 | Wheat | cytosol, plasma membrane, plastid | 76.65 | 76.44 |
| TraesCS4D01G203900.2 | Wheat | cytosol, plasma membrane, plastid | 76.58 | 76.37 |
| Zm00001d047780_P002 | Maize | plasma membrane | 76.65 | 76.22 |
| VIT_14s0108g00430.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 37.44 | 42.08 |
| VIT_18s0001g14660.t01 | Wine grape | peroxisome, plasma membrane, vacuole | 36.3 | 41.8 |
| VIT_02s0012g01660.t01 | Wine grape | plasma membrane | 36.09 | 40.79 |
| VIT_10s0003g02550.t01 | Wine grape | cytosol, nucleus, peroxisome | 15.52 | 40.0 |
| VIT_07s0005g02660.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 36.01 | 39.01 |
| VIT_08s0007g05060.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 36.87 | 38.26 |
| VIT_10s0003g02570.t01 | Wine grape | plasma membrane | 33.31 | 37.77 |
| VIT_05s0020g00890.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 34.73 | 37.71 |
| VIT_10s0003g02540.t01 | Wine grape | plasma membrane | 33.02 | 37.69 |
| VIT_14s0066g02320.t01 | Wine grape | peroxisome | 30.75 | 37.34 |
| VIT_10s0003g02580.t01 | Wine grape | plasma membrane | 33.45 | 37.15 |
| VIT_19s0085g00060.t01 | Wine grape | endoplasmic reticulum, plasma membrane, plastid | 32.24 | 36.98 |
| VIT_17s0000g09760.t01 | Wine grape | plasma membrane | 31.25 | 36.67 |
| VIT_16s0098g00570.t01 | Wine grape | cytosol, plasma membrane, vacuole | 30.53 | 36.11 |
| VIT_01s0137g00350.t01 | Wine grape | endoplasmic reticulum, golgi, plasma membrane | 31.6 | 35.46 |
| VIT_11s0016g03160.t01 | Wine grape | endoplasmic reticulum, golgi, plasma membrane | 30.39 | 34.86 |
| VIT_09s0002g00750.t01 | Wine grape | peroxisome, plastid | 31.74 | 28.28 |
Protein Annotations
| Gene3D:1.20.1560.10 | EntrezGene:100267249 | wikigene:100267249 | MapMan:24.1.3.1.1 | Gene3D:3.40.50.300 | InterPro:AAA+_ATPase |
| InterPro:ABC1_TM_dom | InterPro:ABC1_TM_sf | InterPro:ABC_transporter-like | ProteinID:CCB43607 | ProteinID:CCB43607.1 | ncoils:Coil |
| UniProt:F6GTU3 | EMBL:FN594951 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005215 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016787 | GO:GO:0016887 | GO:GO:0042626 | GO:GO:0055085 | InterPro:IPR003439 |
| InterPro:IPR011527 | InterPro:IPR036640 | EntrezGene:LOC100267249 | wikigene:LOC100267249 | InterPro:P-loop_NTPase | PFAM:PF00005 |
| PFAM:PF00664 | PFscan:PS50893 | PFscan:PS50929 | PANTHER:PTHR24222 | PANTHER:PTHR24222:SF21 | SMART:SM00382 |
| SUPFAM:SSF52540 | SUPFAM:SSF90123 | TMHMM:TMhelix | UniParc:UPI0001983673 | ArrayExpress:VIT_06s0004g04100 | EnsemblPlantsGene:VIT_06s0004g04100 |
| EnsemblPlants:VIT_06s0004g04100.t01 | RefSeq:XP_002284435 | RefSeq:XP_002284435.1 | RefSeq:XP_002284440 | RefSeq:XP_002284440.1 | RefSeq:XP_010651064.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr6:+:5064960..5073048
Molecular Weight (calculated)
155807.0 Da
IEP (calculated)
6.325
GRAVY (calculated)
0.044
Length
1405 amino acids
Sequence
(BLAST)
(BLAST)
0001: MMISRGLFGW SPPHIQPLTP VSEVSEPPES PSPYLEQSND AGPAPAEDDQ EIDEGEEMEQ PPAAVPFSRL FACADRLDWV LMIVGSVAAA AHGAALVIYL
0101: HFFGKVIQLL SYRHPEESDE LFQKFNQHSL HIIYIASGVF LAGWIEVWCW ILTGERQTAV IRSKYVQVLL NQDMSFFDTY GNNGDIVSQV LSDVLLIQSA
0201: LSEKVGNYVH NMGTCFSGLV IGFINCWQIA LITLATGPFI VAAGGISNIF LHKLAENIQD AYAEAANMAE QAMSYIRTLC AFTNETLAKY SYATSLQATL
0301: RYGILISLVQ GLGLGFTYGL AICSCALQLW VGRLLVTHRK AHGGEIIAAL FAIILSGLGL NQAATNFYSF DQGRIAAYRL YEMISRSTST INQDGNTLVS
0401: VQGNIEFRNV YFSYLSRPEI PILSGFYLTV PARKTVALVG RNGSGKSSII PLMERFYDPT LGEVLLDGQN IKSLKLEWLR SQIGLVTQEP ALLSLSIRDN
0501: IAYGRSNATF DQIEEAAKIA HAHAFISSLE KGYETQVGRI GLALTEEQKI KISVARAVLS NPSILLLDEV TGGLDFEAES AVQEALDILM LGRSTIIIAR
0601: QLSLIRNADY IAVMEEGQLV EMGTHDELLS LDGLYTELLR CEEATKPPKR TPIRTHKENT TSQVEKDSPE NNSFEESSSP KMVKSPSLQR VHGSHAIRPT
0701: DETYNFQESP KTQSTPPDQI LEHGLSLDAI EQEPSIKRED SFGKRLPELP KIDVTSISQQ ASNDSDPESP ISPLLSTCDP KKERSHSKSF SQPIGQLSDV
0801: AMKQREVNDK QCQKPPPFWR LVELSLAEWL YAVLGSIGAA VFGSFIPLLA YVLALIVTAY YRPEEHNHLQ NEVNKWCLIL SCMGVVTVVA NFLQHFYFGI
0901: MGEKMTERVR RMMFSAMLRN EVGWFDEEEN SVDTLSMRLA NDATFVRAAF SNRLSVFIQD SAAVVAAVIV GMLLEWRLAF VALGTLPILI VSAIAQKLWL
1001: AGFSRGIQEM HRKASMVLED AVRNIYTVVA YCAGNKVMEL YRLQLKKIYK QSFLQGMVIG FAFGLSQYLL FACNALLLWY TAHSVKNGYV GLPTALKEYM
1101: VFSFATFALV EPFGLAPYIL KRQKSLISVF EIIDRVPKID PDDNSALKPP NVYGSIELKN VDFCYPTHPK SMVLNNFSLK VNGGQTVAIV GVSGSGKSTI
1201: ISLIERFYDP VSGQILLDGR DLKLFNLRWL RNHLGLVQQE PVVFSTTIRE NIIYARHNGT EAEMKEAARI ANAHRFISSL PHGYDTHVGM RGVDLTPGQK
1301: QRISIARVVL KNAPILLLDE ASSAIESESS RVVQEALDTL IMGNKTTILI AHTAAMMRHV DNIVVLNGGR IVEQGTHDSL VARNGLYVQL MQPHFAKGLR
1401: QHRLV
0101: HFFGKVIQLL SYRHPEESDE LFQKFNQHSL HIIYIASGVF LAGWIEVWCW ILTGERQTAV IRSKYVQVLL NQDMSFFDTY GNNGDIVSQV LSDVLLIQSA
0201: LSEKVGNYVH NMGTCFSGLV IGFINCWQIA LITLATGPFI VAAGGISNIF LHKLAENIQD AYAEAANMAE QAMSYIRTLC AFTNETLAKY SYATSLQATL
0301: RYGILISLVQ GLGLGFTYGL AICSCALQLW VGRLLVTHRK AHGGEIIAAL FAIILSGLGL NQAATNFYSF DQGRIAAYRL YEMISRSTST INQDGNTLVS
0401: VQGNIEFRNV YFSYLSRPEI PILSGFYLTV PARKTVALVG RNGSGKSSII PLMERFYDPT LGEVLLDGQN IKSLKLEWLR SQIGLVTQEP ALLSLSIRDN
0501: IAYGRSNATF DQIEEAAKIA HAHAFISSLE KGYETQVGRI GLALTEEQKI KISVARAVLS NPSILLLDEV TGGLDFEAES AVQEALDILM LGRSTIIIAR
0601: QLSLIRNADY IAVMEEGQLV EMGTHDELLS LDGLYTELLR CEEATKPPKR TPIRTHKENT TSQVEKDSPE NNSFEESSSP KMVKSPSLQR VHGSHAIRPT
0701: DETYNFQESP KTQSTPPDQI LEHGLSLDAI EQEPSIKRED SFGKRLPELP KIDVTSISQQ ASNDSDPESP ISPLLSTCDP KKERSHSKSF SQPIGQLSDV
0801: AMKQREVNDK QCQKPPPFWR LVELSLAEWL YAVLGSIGAA VFGSFIPLLA YVLALIVTAY YRPEEHNHLQ NEVNKWCLIL SCMGVVTVVA NFLQHFYFGI
0901: MGEKMTERVR RMMFSAMLRN EVGWFDEEEN SVDTLSMRLA NDATFVRAAF SNRLSVFIQD SAAVVAAVIV GMLLEWRLAF VALGTLPILI VSAIAQKLWL
1001: AGFSRGIQEM HRKASMVLED AVRNIYTVVA YCAGNKVMEL YRLQLKKIYK QSFLQGMVIG FAFGLSQYLL FACNALLLWY TAHSVKNGYV GLPTALKEYM
1101: VFSFATFALV EPFGLAPYIL KRQKSLISVF EIIDRVPKID PDDNSALKPP NVYGSIELKN VDFCYPTHPK SMVLNNFSLK VNGGQTVAIV GVSGSGKSTI
1201: ISLIERFYDP VSGQILLDGR DLKLFNLRWL RNHLGLVQQE PVVFSTTIRE NIIYARHNGT EAEMKEAARI ANAHRFISSL PHGYDTHVGM RGVDLTPGQK
1301: QRISIARVVL KNAPILLLDE ASSAIESESS RVVQEALDTL IMGNKTTILI AHTAAMMRHV DNIVVLNGGR IVEQGTHDSL VARNGLYVQL MQPHFAKGLR
1401: QHRLV
0001: MMISRGLFGW SPPHMQPLTP VSEVSEPPES PSPYLDPGAE SGGGTGTAAA LAEADEEMDD QDELEPPPAA VPFSQLFACA DRFDWVLMIV GSVAAAAHGT
0101: ALIVYLHYFA KIVDVLAFSN DSSQQRSEHQ FDRLVQLSLT IVYIAGGVFI SGWIEVSCWI LTGERQTAVI RSKYVQVLLN QDMSFFDTYG NNGDIVSQVL
0201: SDVLLIQSAL SEKVGNYIHN MATFISGLVI GFVNCWEIAL ITLATGPFIV AAGGISNIFL HRLAENIQDA YAEAAGIAEQ AISYIRTLYA FTNETLAKYS
0301: YATSLQATLR YGILISLVQG LGLGFTYGLA ICSCALQLWI GRFFVHNGRA NGGEIIAALF AVILSGLGLN QAATNFYSFD QGRIAAYRLF EMITRSSSVA
0401: NQEGAVLASV QGNIEFRNVY FSYLSRPEIP ILSGFYLTVP AKKAVALVGR NGSGKSSIIP LMERFYDPTL GEVLLDGENI KNLKLEWLRS QIGLVTQEPA
0501: LLSLSIRENI AYGRDATLDQ IEEAAKNAHA HTFISSLEKG YETQVGRAGL AMTEEQKIKL SIARAVLLNP TILLLDEVTG GLDFEAERIV QEALDLLMLG
0601: RSTIIIARRL SLIKNADYIA VMEEGQLVEM GTHDELINLG GLYAELLKCE EATKLPRRMP VRNYKESAVF EVERDSSAGC GVQEPSSPKM IKSPSLQRGS
0701: GVFRPQELCF DTEESPKAHS PASEKTGEDG MSLDCADKEP TIKRQDSFEM RLPHLPKVDV QCPQQKSNGS EPESPVSPLL TSDPKNERSH SQTFSRPLSS
0801: PDDTKANGKA SKDAQHKESP SFWRLAQLSF PEWLYAVLGS LGAAIFGSFN PLLAYVIALV VTEYYKSKGG HLREEVDKWC LIIACMGIVT VVANFLQHFY
0901: FGIMGEKMTE RVRRMMFSAM LRNEVGWFDD EENSPDTLSM RLANDATFVR AAFSNRLSIF IQDSFAVIVA LLIGLLLGWR LALVALATLP ILTLSAIAQK
1001: LWLAGFSKGI QEMHRKASLV LEDAVRNIYT VVAFCAGNKV MELYRMQLQR ILRQSYLHGM AIGFAFGFSQ FLLFACNALL LWCTALSVNR GYMKLSTAIT
1101: EYMVFSFATF ALVEPFGLAP YILKRRKSLI SVFEIVDRVP TIEPDDNSAL KPPNVYGSIE LKNVDFCYPT RPEILVLSNF SLKISGGQTV AVVGVSGSGK
1201: STIISLVERY YDPVAGQVLL DGRDLKLYNL RWLRSHMGLV QQEPIIFSTT IRENIIYARH NASEAEMKEA ARIANAHHFI SSLPHGYDTH IGMRGVELTP
1301: GQKQRIAIAR VVLKNAPIIL IDEASSSIES ESSRVVQEAL DTLIMGNKTT ILIAHRAAMM RHVDNIVVLN GGRIVEEGTH DSLAAKNGLY VRLMQPHFGK
1401: GLRQHRLI
0101: ALIVYLHYFA KIVDVLAFSN DSSQQRSEHQ FDRLVQLSLT IVYIAGGVFI SGWIEVSCWI LTGERQTAVI RSKYVQVLLN QDMSFFDTYG NNGDIVSQVL
0201: SDVLLIQSAL SEKVGNYIHN MATFISGLVI GFVNCWEIAL ITLATGPFIV AAGGISNIFL HRLAENIQDA YAEAAGIAEQ AISYIRTLYA FTNETLAKYS
0301: YATSLQATLR YGILISLVQG LGLGFTYGLA ICSCALQLWI GRFFVHNGRA NGGEIIAALF AVILSGLGLN QAATNFYSFD QGRIAAYRLF EMITRSSSVA
0401: NQEGAVLASV QGNIEFRNVY FSYLSRPEIP ILSGFYLTVP AKKAVALVGR NGSGKSSIIP LMERFYDPTL GEVLLDGENI KNLKLEWLRS QIGLVTQEPA
0501: LLSLSIRENI AYGRDATLDQ IEEAAKNAHA HTFISSLEKG YETQVGRAGL AMTEEQKIKL SIARAVLLNP TILLLDEVTG GLDFEAERIV QEALDLLMLG
0601: RSTIIIARRL SLIKNADYIA VMEEGQLVEM GTHDELINLG GLYAELLKCE EATKLPRRMP VRNYKESAVF EVERDSSAGC GVQEPSSPKM IKSPSLQRGS
0701: GVFRPQELCF DTEESPKAHS PASEKTGEDG MSLDCADKEP TIKRQDSFEM RLPHLPKVDV QCPQQKSNGS EPESPVSPLL TSDPKNERSH SQTFSRPLSS
0801: PDDTKANGKA SKDAQHKESP SFWRLAQLSF PEWLYAVLGS LGAAIFGSFN PLLAYVIALV VTEYYKSKGG HLREEVDKWC LIIACMGIVT VVANFLQHFY
0901: FGIMGEKMTE RVRRMMFSAM LRNEVGWFDD EENSPDTLSM RLANDATFVR AAFSNRLSIF IQDSFAVIVA LLIGLLLGWR LALVALATLP ILTLSAIAQK
1001: LWLAGFSKGI QEMHRKASLV LEDAVRNIYT VVAFCAGNKV MELYRMQLQR ILRQSYLHGM AIGFAFGFSQ FLLFACNALL LWCTALSVNR GYMKLSTAIT
1101: EYMVFSFATF ALVEPFGLAP YILKRRKSLI SVFEIVDRVP TIEPDDNSAL KPPNVYGSIE LKNVDFCYPT RPEILVLSNF SLKISGGQTV AVVGVSGSGK
1201: STIISLVERY YDPVAGQVLL DGRDLKLYNL RWLRSHMGLV QQEPIIFSTT IRENIIYARH NASEAEMKEA ARIANAHHFI SSLPHGYDTH IGMRGVELTP
1301: GQKQRIAIAR VVLKNAPIIL IDEASSSIES ESSRVVQEAL DTLIMGNKTT ILIAHRAAMM RHVDNIVVLN GGRIVEEGTH DSLAAKNGLY VRLMQPHFGK
1401: GLRQHRLI
Arabidopsis Description
ABCB20ABC transporter B family member 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9M3B9]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.